Analysis of interatomic Contacts of Structural Units in PDB entry:
5DT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DT9 entry

There is 1 chain in PDB entry 5DT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4CYS 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5DT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 23Right-handed alpha
Helix 2
AA2
A
32 36Right-handed 310
Helix 3
AA3
A
37 42Right-handed 310
Helix 4
AA4
A
80 87Right-handed alpha
Helix 5
AA5
A
98 118Right-handed alpha
Helix 6
AA6
A
120 124Right-handed 310
Helix 7
AA7
A
132 145Right-handed alpha
Helix 8
AA8
A
153 160Right-handed alpha
Helix 9
AA9
A
167 175Right-handed alpha
Helix 10
AB1
A
197 202Right-handed alpha
Helix 11
AB2
A
215 219Right-handed 310
Helix 12
AB3
A
220 229Right-handed alpha
Helix 13
AB4
A
251 255Right-handed 310
Helix 14
AB5
A
266 286Right-handed alpha
Helix 15
AB6
A
292 297Right-handed alpha
Helix 16
AB7
A
312 324Right-handed alpha
Helix 17
AB8
A
325 337Right-handed alpha
Helix 18
AB9
A
341 349Right-handed alpha
Helix 19
AC1
A
355 358Right-handed 310
Helix 20
AC2
A
369 376Right-handed alpha
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There are 3 sheets in PDB entry 5DT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
7 12parallel
Strand 3
A
46 49parallel
Strand 4
A
68 71parallel
Strand 5
A
90 92parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
126 129parallel
Strand 3
A
177 180parallel
Strand 4
A
209 212parallel
Strand 5
A
235 238parallel
Strand 6
A
257 258parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
360 363parallel
Strand 3
A
378 381parallel
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