Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DTE entry

There are 4 chains in PDB entry 5DTE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 28	TYR 313
B	ASP 27	TYR 313
C	LYS 28	TYR 313
D	LYS 28	TYR 313

There are 44 helices in PDB entry 5DTE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	57	Right-handed alpha
Helix 2	AA2	A	71	85	Right-handed alpha
Helix 3	AA3	A	100	108	Right-handed alpha
Helix 4	AA4	A	122	129	Right-handed alpha
Helix 5	AA5	A	139	155	Right-handed alpha
Helix 6	AA6	A	170	185	Right-handed alpha
Helix 7	AA7	A	201	216	Right-handed alpha
Helix 8	AA8	A	226	240	Right-handed alpha
Helix 9	AA9	A	254	264	Right-handed alpha
Helix 10	AB1	A	273	290	Right-handed alpha
Helix 11	AB2	A	309	313	Right-handed 310
Helix 12	AB3	B	40	57	Right-handed alpha
Helix 13	AB4	B	71	85	Right-handed alpha
Helix 14	AB5	B	100	110	Right-handed alpha
Helix 15	AB6	B	122	129	Right-handed alpha
Helix 16	AB7	B	139	155	Right-handed alpha
Helix 17	AB8	B	170	185	Right-handed alpha
Helix 18	AB9	B	201	213	Right-handed alpha
Helix 19	AC1	B	226	240	Right-handed alpha
Helix 20	AC2	B	254	263	Right-handed alpha
Helix 21	AC3	B	273	290	Right-handed alpha
Helix 22	AC4	B	306	311	Right-handed alpha
Helix 23	AC5	C	40	57	Right-handed alpha
Helix 24	AC6	C	71	85	Right-handed alpha
Helix 25	AC7	C	100	110	Right-handed alpha
Helix 26	AC8	C	122	129	Right-handed alpha
Helix 27	AC9	C	139	155	Right-handed alpha
Helix 28	AD1	C	170	185	Right-handed alpha
Helix 29	AD2	C	201	216	Right-handed alpha
Helix 30	AD3	C	226	240	Right-handed alpha
Helix 31	AD4	C	254	263	Right-handed alpha
Helix 32	AD5	C	273	290	Right-handed alpha
Helix 33	AD6	C	307	313	Right-handed 310
Helix 34	AD7	D	40	58	Right-handed alpha
Helix 35	AD8	D	73	85	Right-handed alpha
Helix 36	AD9	D	100	111	Right-handed alpha
Helix 37	AE1	D	122	130	Right-handed alpha
Helix 38	AE2	D	139	155	Right-handed alpha
Helix 39	AE3	D	170	185	Right-handed alpha
Helix 40	AE4	D	201	216	Right-handed alpha
Helix 41	AE5	D	226	239	Right-handed alpha
Helix 42	AE6	D	254	264	Right-handed alpha
Helix 43	AE7	D	273	290	Right-handed alpha
Helix 44	AE8	D	307	312	Right-handed alpha

There are 12 sheets in PDB entry 5DTE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	65	first strand
Strand 2	A	30	35	parallel
Strand 3	A	89	92	parallel
Strand 4	A	114	117	parallel
Strand 5	A	134	137	parallel
Strand 6	A	297	299	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	197	first strand
Strand 2	A	159	165	parallel
Strand 3	A	221	224	parallel
Strand 4	A	247	249	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	303	305	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	30	35	parallel
Strand 3	B	64	65	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	30	35	parallel
Strand 3	B	89	92	parallel
Strand 4	B	114	117	parallel
Strand 5	B	134	137	parallel
Strand 6	B	297	299	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	197	first strand
Strand 2	B	158	165	parallel
Strand 3	B	221	224	parallel
Strand 4	B	247	249	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	303	305	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	30	35	parallel
Strand 3	C	89	92	parallel
Strand 4	C	114	117	parallel
Strand 5	C	134	138	parallel
Strand 6	C	297	300	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	196	first strand
Strand 2	C	159	164	parallel
Strand 3	C	219	224	parallel
Strand 4	C	247	252	parallel
Strand 5	C	268	271	parallel
Strand 6	C	303	304	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	65	first strand
Strand 2	D	30	35	parallel
Strand 3	D	89	92	parallel
Strand 4	D	114	117	parallel
Strand 5	D	134	137	parallel
Strand 6	D	297	299	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	197	first strand
Strand 2	D	159	165	parallel
Strand 3	D	221	224	parallel
Strand 4	D	247	249	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	271	first strand
Strand 2	D	303	306	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DTE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTE