Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DTH entry

There are 4 chains in PDB entry 5DTH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1314	ALA 1422
B	ASP 1312	ALA 1422
C	LYS 1313	ASN 1419
D	GLU 1314	ASN 1419

There are 13 helices in PDB entry 5DTH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1320	1329	Right-handed alpha
Helix 2	AA2	A	1371	1377	Right-handed alpha
Helix 3	AA3	A	1397	1408	Right-handed alpha
Helix 4	AA4	B	1320	1329	Right-handed alpha
Helix 5	AA5	B	1371	1377	Right-handed alpha
Helix 6	AA6	B	1397	1408	Right-handed alpha
Helix 7	AA7	C	1320	1329	Right-handed alpha
Helix 8	AA8	C	1371	1377	Right-handed alpha
Helix 9	AA9	C	1397	1408	Right-handed alpha
Helix 10	AB1	D	1314	1318	Right-handed 310
Helix 11	AB2	D	1320	1329	Right-handed alpha
Helix 12	AB3	D	1371	1377	Right-handed alpha
Helix 13	AB4	D	1397	1408	Right-handed alpha

There are 8 sheets in PDB entry 5DTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1334	1341	first strand
Strand 2	A	1411	1418	anti-parallel
Strand 3	A	1384	1388	anti-parallel
Strand 4	A	1391	1392	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1349	1353	first strand
Strand 2	A	1362	1367	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1334	1341	first strand
Strand 2	B	1411	1418	anti-parallel
Strand 3	B	1384	1388	anti-parallel
Strand 4	B	1391	1392	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1349	1353	first strand
Strand 2	B	1362	1367	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1334	1341	first strand
Strand 2	C	1411	1418	anti-parallel
Strand 3	C	1384	1388	anti-parallel
Strand 4	C	1391	1392	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1349	1354	first strand
Strand 2	C	1361	1367	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1334	1341	first strand
Strand 2	D	1411	1418	anti-parallel
Strand 3	D	1384	1388	anti-parallel
Strand 4	D	1391	1392	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1349	1355	first strand
Strand 2	D	1360	1367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DTH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTH