Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DTO entry

There are 2 chains in PDB entry 5DTO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6MET 883
B
 A 1 U 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5DTO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
21 29Right-handed alpha
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
57 68Right-handed alpha
Helix 5
AA5
A
85 92Right-handed alpha
Helix 6
AA6
A
120 122Right-handed 310
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
153 169Right-handed alpha
Helix 9
AA9
A
170 172Right-handed 310
Helix 10
AB1
A
186 201Right-handed alpha
Helix 11
AB2
A
226 244Right-handed alpha
Helix 12
AB3
A
263 267Right-handed 310
Helix 13
AB4
A
272 287Right-handed alpha
Helix 14
AB5
A
321 328Right-handed alpha
Helix 15
AB6
A
329 333Right-handed 310
Helix 16
AB7
A
346 358Right-handed alpha
Helix 17
AB8
A
366 385Right-handed alpha
Helix 18
AB9
A
394 404Right-handed alpha
Helix 19
AC1
A
419 427Right-handed alpha
Helix 20
AC2
A
427 443Right-handed alpha
Helix 21
AC3
A
473 489Right-handed alpha
Helix 22
AC4
A
489 494Right-handed alpha
Helix 23
AC5
A
498 503Right-handed alpha
Helix 24
AC6
A
510 523Right-handed alpha
Helix 25
AC7
A
536 541Right-handed 310
Helix 26
AC8
A
542 550Right-handed alpha
Helix 27
AC9
A
551 556Right-handed 310
Helix 28
AD1
A
557 572Right-handed alpha
Helix 29
AD2
A
604 625Right-handed alpha
Helix 30
AD3
A
629 635Right-handed alpha
Helix 31
AD4
A
640 656Right-handed alpha
Helix 32
AD5
A
672 676Right-handed 310
Helix 33
AD6
A
678 684Right-handed alpha
Helix 34
AD7
A
702 706Right-handed 310
Helix 35
AD8
A
730 739Right-handed alpha
Helix 36
AD9
A
747 766Right-handed alpha
Helix 37
AE1
A
769 781Right-handed alpha
Helix 38
AE2
A
808 818Right-handed alpha
Helix 39
AE3
A
840 847Right-handed alpha
Helix 40
AE4
A
853 861Right-handed alpha
Helix 41
AE5
A
862 875Right-handed alpha
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There are 5 sheets in PDB entry 5DTO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
250 252parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
97 103parallel
Strand 3
A
75 80parallel
Strand 4
A
142 145parallel
Strand 5
A
176 181parallel
Strand 6
A
217 220anti-parallel
Strand 7
A
203 205anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 310first strand
Strand 2
A
586 594anti-parallel
Strand 3
A
575 583anti-parallel
Strand 4
A
451 453parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 661first strand
Strand 2
A
664 667anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 717first strand
Strand 2
A
723 728anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il