Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DTU entry

There is 1 chain in PDB entry 5DTU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 241HIS 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5DTU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
251 263Right-handed alpha
Helix 2
AA2
A
277 281Right-handed 310
Helix 3
AA3
A
284 294Right-handed alpha
Helix 4
AA4
A
300 311Right-handed alpha
Helix 5
AA5
A
325 339Right-handed alpha
Helix 6
AA6
A
361 377Right-handed alpha
Helix 7
AA7
A
391 396Right-handed alpha
Helix 8
AA8
A
409 414Right-handed alpha
Helix 9
AA9
A
434 440Right-handed alpha
Helix 10
AB1
A
443 450Right-handed alpha
Helix 11
AB2
A
493 502Right-handed alpha
Helix 12
AB3
A
534 546Right-handed alpha
Helix 13
AB4
A
558 572Right-handed alpha
Helix 14
AB5
A
584 597Right-handed alpha
Helix 15
AB6
A
629 638Right-handed alpha
Helix 16
AB7
A
654 656Right-handed 310
Helix 17
AB8
A
657 671Right-handed alpha
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There are 2 sheets in PDB entry 5DTU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
509 512anti-parallel
Strand 3
A
317 319parallel
Strand 4
A
484 489parallel
Strand 5
A
429 433parallel
Strand 6
A
355 358parallel
Strand 7
A
405 408parallel
Strand 8
A
383 386parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 529first strand
Strand 2
A
648 653parallel
Strand 3
A
620 623parallel
Strand 4
A
552 555parallel
Strand 5
A
602 605parallel
Strand 6
A
576 578parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il