Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DTW entry

There are 6 chains in PDB entry 5DTW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ALA 243
B	HIS 0	ALA 243
C	GLY -2	ALA 243
D	HIS 0	ALA 243
E	HIS 0	ALA 243
F	HIS 0	ARG 136

There are 72 helices in PDB entry 5DTW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	21	Right-handed 310
Helix 2	AA2	A	25	38	Right-handed alpha
Helix 3	AA3	A	70	85	Right-handed alpha
Helix 4	AA4	A	99	108	Right-handed alpha
Helix 5	AA5	A	121	126	Right-handed 310
Helix 6	AA6	A	131	154	Right-handed alpha
Helix 7	AA7	A	159	166	Right-handed alpha
Helix 8	AA8	A	173	185	Right-handed alpha
Helix 9	AA9	A	188	201	Right-handed alpha
Helix 10	AB1	A	209	221	Right-handed alpha
Helix 11	AB2	A	222	234	Right-handed alpha
Helix 12	AB3	B	17	21	Right-handed 310
Helix 13	AB4	B	25	38	Right-handed alpha
Helix 14	AB5	B	70	85	Right-handed alpha
Helix 15	AB6	B	99	108	Right-handed alpha
Helix 16	AB7	B	122	127	Right-handed alpha
Helix 17	AB8	B	131	143	Right-handed alpha
Helix 18	AB9	B	143	154	Right-handed alpha
Helix 19	AC1	B	159	166	Right-handed alpha
Helix 20	AC2	B	173	186	Right-handed alpha
Helix 21	AC3	B	188	201	Right-handed alpha
Helix 22	AC4	B	209	221	Right-handed alpha
Helix 23	AC5	B	223	234	Right-handed alpha
Helix 24	AC6	C	17	21	Right-handed 310
Helix 25	AC7	C	25	38	Right-handed alpha
Helix 26	AC8	C	71	85	Right-handed alpha
Helix 27	AC9	C	99	108	Right-handed alpha
Helix 28	AD1	C	122	127	Right-handed alpha
Helix 29	AD2	C	131	143	Right-handed alpha
Helix 30	AD3	C	143	154	Right-handed alpha
Helix 31	AD4	C	159	166	Right-handed alpha
Helix 32	AD5	C	173	185	Right-handed alpha
Helix 33	AD6	C	188	201	Right-handed alpha
Helix 34	AD7	C	209	222	Right-handed alpha
Helix 35	AD8	C	222	234	Right-handed alpha
Helix 36	AD9	D	17	21	Right-handed 310
Helix 37	AE1	D	25	38	Right-handed alpha
Helix 38	AE2	D	64	68	Right-handed 310
Helix 39	AE3	D	70	85	Right-handed alpha
Helix 40	AE4	D	99	107	Right-handed alpha
Helix 41	AE5	D	122	127	Right-handed alpha
Helix 42	AE6	D	131	143	Right-handed alpha
Helix 43	AE7	D	143	154	Right-handed alpha
Helix 44	AE8	D	159	166	Right-handed alpha
Helix 45	AE9	D	173	186	Right-handed alpha
Helix 46	AF1	D	188	201	Right-handed alpha
Helix 47	AF2	D	209	221	Right-handed alpha
Helix 48	AF3	D	222	233	Right-handed alpha
Helix 49	AF4	E	17	21	Right-handed 310
Helix 50	AF5	E	25	38	Right-handed alpha
Helix 51	AF6	E	70	85	Right-handed alpha
Helix 52	AF7	E	99	108	Right-handed alpha
Helix 53	AF8	E	122	126	Right-handed 310
Helix 54	AF9	E	131	143	Right-handed alpha
Helix 55	AG1	E	143	154	Right-handed alpha
Helix 56	AG2	E	159	165	Right-handed alpha
Helix 57	AG3	E	173	186	Right-handed alpha
Helix 58	AG4	E	188	201	Right-handed alpha
Helix 59	AG5	E	209	221	Right-handed alpha
Helix 60	AG6	E	222	234	Right-handed alpha
Helix 61	AG7	F	17	21	Right-handed 310
Helix 62	AG8	F	25	38	Right-handed alpha
Helix 63	AG9	F	70	85	Right-handed alpha
Helix 64	AH1	F	99	108	Right-handed alpha
Helix 65	AH2	F	121	126	Right-handed 310
Helix 66	AH3	F	131	143	Right-handed alpha
Helix 67	AH4	F	143	154	Right-handed alpha
Helix 68	AH5	F	159	166	Right-handed alpha
Helix 69	AH6	F	173	185	Right-handed alpha
Helix 70	AH7	F	188	201	Right-handed alpha
Helix 71	AH8	F	209	222	Right-handed alpha
Helix 72	AH9	F	222	233	Right-handed alpha

There are 12 sheets in PDB entry 5DTW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	10	15	anti-parallel
Strand 3	A	46	51	parallel
Strand 4	A	89	93	parallel
Strand 5	A	110	113	parallel
Strand 6	A	170	171	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	118	120	parallel
Strand 3	A	157	158	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	10	15	anti-parallel
Strand 3	B	46	51	parallel
Strand 4	B	89	93	parallel
Strand 5	B	110	113	parallel
Strand 6	B	170	171	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	118	120	parallel
Strand 3	B	157	158	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	10	15	anti-parallel
Strand 3	C	46	51	parallel
Strand 4	C	89	93	parallel
Strand 5	C	110	113	parallel
Strand 6	C	170	171	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	118	120	parallel
Strand 3	C	157	158	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	D	10	15	anti-parallel
Strand 3	D	46	51	parallel
Strand 4	D	89	93	parallel
Strand 5	D	110	113	parallel
Strand 6	D	170	171	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	118	120	parallel
Strand 3	D	157	158	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	7	first strand
Strand 2	E	10	15	anti-parallel
Strand 3	E	46	51	parallel
Strand 4	E	89	93	parallel
Strand 5	E	110	113	parallel
Strand 6	E	170	171	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	98	first strand
Strand 2	E	118	120	parallel
Strand 3	E	157	158	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	10	15	anti-parallel
Strand 3	F	46	51	parallel
Strand 4	F	89	93	parallel
Strand 5	F	110	113	parallel
Strand 6	F	170	171	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	98	first strand
Strand 2	F	118	120	parallel
Strand 3	F	157	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DTW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTW