Analysis of interatomic Contacts of Structural Units in PDB entry:
5DU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DU0 entry

There are 8 chains in PDB entry 5DU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 65
A
 VAL 69HIS 232
B
 SER 3LEU 65
B
 VAL 69HIS 232
C
 SER 3LEU 65
C
 VAL 69HIS 232
D
 SER 3LEU 65
D
 VAL 69HIS 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5DU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 10Right-handed 310
Helix 2
AA2
A
57 62Right-handed 310
Helix 3
AA3
A
69 73Right-handed 310
Helix 4
AA4
A
76 82Right-handed 310
Helix 5
AA5
A
83 88Right-handed alpha
Helix 6
AA6
B
4 10Right-handed 310
Helix 7
AA7
B
57 62Right-handed 310
Helix 8
AA8
B
69 73Right-handed 310
Helix 9
AA9
B
76 82Right-handed 310
Helix 10
AB1
B
83 88Right-handed alpha
Helix 11
AB2
C
57 62Right-handed 310
Helix 12
AB3
C
69 73Right-handed 310
Helix 13
AB4
C
76 82Right-handed 310
Helix 14
AB5
C
83 88Right-handed alpha
Helix 15
AB6
D
4 10Right-handed 310
Helix 16
AB7
D
57 62Right-handed 310
Helix 17
AB8
D
69 73Right-handed 310
Helix 18
AB9
D
76 82Right-handed 310
Helix 19
AC1
D
83 88Right-handed alpha
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There are 4 sheets in PDB entry 5DU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 23first strand
Strand 2
A
26 37anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
218 228anti-parallel
Strand 5
A
200 209anti-parallel
Strand 6
A
149 156anti-parallel
Strand 7
A
161 171anti-parallel
Strand 8
A
177 188anti-parallel
Strand 9
A
93 101anti-parallel
Strand 10
A
106 116anti-parallel
Strand 11
A
119 129anti-parallel
Strand 12
A
13 23parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 23first strand
Strand 2
B
26 36anti-parallel
Strand 3
B
46 49anti-parallel
Strand 4
B
218 228anti-parallel
Strand 5
B
200 209anti-parallel
Strand 6
B
149 156anti-parallel
Strand 7
B
161 171anti-parallel
Strand 8
B
177 188anti-parallel
Strand 9
B
93 101anti-parallel
Strand 10
B
106 116anti-parallel
Strand 11
B
119 129anti-parallel
Strand 12
B
13 23parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 23first strand
Strand 2
C
26 37anti-parallel
Strand 3
C
42 49anti-parallel
Strand 4
C
218 228anti-parallel
Strand 5
C
200 209anti-parallel
Strand 6
C
149 156anti-parallel
Strand 7
C
161 171anti-parallel
Strand 8
C
177 188anti-parallel
Strand 9
C
93 101anti-parallel
Strand 10
C
106 116anti-parallel
Strand 11
C
119 129anti-parallel
Strand 12
C
13 23parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 23first strand
Strand 2
D
26 37anti-parallel
Strand 3
D
42 49anti-parallel
Strand 4
D
218 228anti-parallel
Strand 5
D
200 209anti-parallel
Strand 6
D
149 156anti-parallel
Strand 7
D
161 171anti-parallel
Strand 8
D
177 188anti-parallel
Strand 9
D
93 101anti-parallel
Strand 10
D
106 116anti-parallel
Strand 11
D
119 129anti-parallel
Strand 12
D
13 23parallel
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