Analysis of interatomic Contacts of Structural Units in PDB entry:
5DU2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DU2 entry

There are 2 chains in PDB entry 5DU2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ARG 399
B
 ALA 4ARG 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5DU2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
23 33Right-handed alpha
Helix 3
AA3
A
45 52Right-handed alpha
Helix 4
AA4
A
76 98Right-handed alpha
Helix 5
AA5
A
111 123Right-handed alpha
Helix 6
AA6
A
140 149Right-handed alpha
Helix 7
AA7
A
153 170Right-handed alpha
Helix 8
AA8
A
171 172Right-handed 310
Helix 9
AA9
A
173 175Right-handed 310
Helix 10
AB1
A
176 183Right-handed alpha
Helix 11
AB2
A
193 197Right-handed 310
Helix 12
AB3
A
199 203Right-handed 310
Helix 13
AB4
A
249 256Right-handed alpha
Helix 14
AB5
A
289 295Right-handed alpha
Helix 15
AB6
A
305 316Right-handed alpha
Helix 16
AB7
A
325 327Right-handed 310
Helix 17
AB8
A
328 338Right-handed alpha
Helix 18
AB9
A
350 363Right-handed alpha
Helix 19
AC1
A
364 381Right-handed alpha
Helix 20
AC2
A
382 396Right-handed alpha
Helix 21
AC3
B
16 21Right-handed alpha
Helix 22
AC4
B
23 33Right-handed alpha
Helix 23
AC5
B
45 52Right-handed alpha
Helix 24
AC6
B
66 71Right-handed alpha
Helix 25
AC7
B
76 98Right-handed alpha
Helix 26
AC8
B
111 123Right-handed alpha
Helix 27
AC9
B
140 149Right-handed alpha
Helix 28
AD1
B
155 170Right-handed alpha
Helix 29
AD2
B
171 172Right-handed 310
Helix 30
AD3
B
173 175Right-handed 310
Helix 31
AD4
B
176 183Right-handed alpha
Helix 32
AD5
B
193 197Right-handed 310
Helix 33
AD6
B
199 203Right-handed 310
Helix 34
AD7
B
249 256Right-handed alpha
Helix 35
AD8
B
289 295Right-handed alpha
Helix 36
AD9
B
305 316Right-handed alpha
Helix 37
AE1
B
325 327Right-handed 310
Helix 38
AE2
B
328 338Right-handed alpha
Helix 39
AE3
B
350 363Right-handed alpha
Helix 40
AE4
B
364 381Right-handed alpha
Helix 41
AE5
B
382 396Right-handed alpha
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There are 4 sheets in PDB entry 5DU2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
36 41parallel
Strand 3
A
8 12parallel
Strand 4
A
104 108parallel
Strand 5
A
126 130parallel
Strand 6
A
188 190parallel
Strand 7
A
207 209parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 285first strand
Strand 2
A
261 265parallel
Strand 3
A
232 236parallel
Strand 4
A
299 302parallel
Strand 5
A
319 321parallel
Strand 6
A
341 343parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
36 41parallel
Strand 3
B
8 12parallel
Strand 4
B
104 108parallel
Strand 5
B
126 130parallel
Strand 6
B
188 190parallel
Strand 7
B
207 209parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 285first strand
Strand 2
B
261 265parallel
Strand 3
B
232 236parallel
Strand 4
B
299 302parallel
Strand 5
B
319 321parallel
Strand 6
B
341 343parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il