Analysis of interatomic Contacts of Structural Units in PDB entry:
5DUC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DUC entry

There are 3 chains in PDB entry 5DUC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ALA 243
B
 HIS 0ALA 243
C
 HIS 0ALA 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5DUC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
25 39Right-handed alpha
Helix 3
AA3
A
67 69Right-handed 310
Helix 4
AA4
A
70 84Right-handed alpha
Helix 5
AA5
A
99 108Right-handed alpha
Helix 6
AA6
A
121 126Right-handed 310
Helix 7
AA7
A
131 143Right-handed alpha
Helix 8
AA8
A
143 154Right-handed alpha
Helix 9
AA9
A
159 166Right-handed alpha
Helix 10
AB1
A
173 186Right-handed alpha
Helix 11
AB2
A
188 201Right-handed alpha
Helix 12
AB3
A
209 221Right-handed alpha
Helix 13
AB4
A
222 234Right-handed alpha
Helix 14
AB5
B
17 21Right-handed 310
Helix 15
AB6
B
25 39Right-handed alpha
Helix 16
AB7
B
67 69Right-handed 310
Helix 17
AB8
B
70 85Right-handed alpha
Helix 18
AB9
B
99 108Right-handed alpha
Helix 19
AC1
B
121 126Right-handed 310
Helix 20
AC2
B
131 143Right-handed alpha
Helix 21
AC3
B
143 153Right-handed alpha
Helix 22
AC4
B
159 166Right-handed alpha
Helix 23
AC5
B
173 185Right-handed alpha
Helix 24
AC6
B
188 201Right-handed alpha
Helix 25
AC7
B
209 221Right-handed alpha
Helix 26
AC8
B
222 234Right-handed alpha
Helix 27
AC9
C
17 21Right-handed 310
Helix 28
AD1
C
25 39Right-handed alpha
Helix 29
AD2
C
67 69Right-handed 310
Helix 30
AD3
C
70 85Right-handed alpha
Helix 31
AD4
C
99 108Right-handed alpha
Helix 32
AD5
C
121 126Right-handed 310
Helix 33
AD6
C
131 143Right-handed alpha
Helix 34
AD7
C
143 154Right-handed alpha
Helix 35
AD8
C
159 166Right-handed alpha
Helix 36
AD9
C
173 185Right-handed alpha
Helix 37
AE1
C
188 201Right-handed alpha
Helix 38
AE2
C
209 221Right-handed alpha
Helix 39
AE3
C
222 234Right-handed alpha
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There are 6 sheets in PDB entry 5DUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
10 15anti-parallel
Strand 3
A
46 51parallel
Strand 4
A
89 93parallel
Strand 5
A
110 113parallel
Strand 6
A
170 171parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
118 120parallel
Strand 3
A
157 158anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
10 15anti-parallel
Strand 3
B
46 51parallel
Strand 4
B
89 93parallel
Strand 5
B
110 113parallel
Strand 6
B
170 171parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
118 120parallel
Strand 3
B
157 158anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 7first strand
Strand 2
C
10 15anti-parallel
Strand 3
C
46 51parallel
Strand 4
C
89 93parallel
Strand 5
C
110 113parallel
Strand 6
C
170 171parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 98first strand
Strand 2
C
118 120parallel
Strand 3
C
157 158anti-parallel
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