Analysis of interatomic Contacts of Structural Units in PDB entry:
5DUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DUF entry

There is 1 chain in PDB entry 5DUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ALA 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5DUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
25 38Right-handed alpha
Helix 3
AA3
A
67 69Right-handed 310
Helix 4
AA4
A
70 85Right-handed alpha
Helix 5
AA5
A
99 108Right-handed alpha
Helix 6
AA6
A
122 127Right-handed alpha
Helix 7
AA7
A
131 143Right-handed alpha
Helix 8
AA8
A
143 154Right-handed alpha
Helix 9
AA9
A
159 166Right-handed alpha
Helix 10
AB1
A
173 185Right-handed alpha
Helix 11
AB2
A
188 201Right-handed alpha
Helix 12
AB3
A
209 221Right-handed alpha
Helix 13
AB4
A
222 234Right-handed alpha
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There are 2 sheets in PDB entry 5DUF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
10 15anti-parallel
Strand 3
A
46 51parallel
Strand 4
A
89 93parallel
Strand 5
A
110 113parallel
Strand 6
A
170 171parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
118 120parallel
Strand 3
A
157 158anti-parallel
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