Analysis of interatomic Contacts of Structural Units in PDB entry:
5DUR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DUR entry

There are 6 chains in PDB entry 5DUR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	LEU 2	SER 223
L	ALA 3	PRO 214
C	LYS 48	VAL 265
B	GLN 1	PRO 221
D	ALA 3	PRO 214
A	LYS 48	VAL 265

There are 26 helices in PDB entry 5DUR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	88	92	Right-handed 310
Helix 2	AA2	H	164	166	Right-handed 310
Helix 3	AA3	H	193	197	Right-handed 310
Helix 4	AA4	H	209	212	Right-handed 310
Helix 5	AA5	L	28	32	Right-handed 310
Helix 6	AA6	L	81	85	Right-handed 310
Helix 7	AA7	L	127	132	Right-handed alpha
Helix 8	AA8	L	187	194	Right-handed alpha
Helix 9	AA9	C	56	63	Right-handed alpha
Helix 10	AB1	C	64	71	Right-handed 310
Helix 11	AB2	C	97	106	Right-handed alpha
Helix 12	AB3	C	118	122	Right-handed 310
Helix 13	AB4	C	183	191	Right-handed alpha
Helix 14	AB5	B	88	92	Right-handed 310
Helix 15	AB6	B	164	166	Right-handed 310
Helix 16	AB7	B	193	197	Right-handed 310
Helix 17	AB8	B	209	212	Right-handed 310
Helix 18	AB9	D	28	32	Right-handed 310
Helix 19	AC1	D	81	85	Right-handed 310
Helix 20	AC2	D	127	132	Right-handed alpha
Helix 21	AC3	D	187	194	Right-handed alpha
Helix 22	AC4	A	56	63	Right-handed alpha
Helix 23	AC5	A	64	71	Right-handed 310
Helix 24	AC6	A	97	106	Right-handed alpha
Helix 25	AC7	A	118	122	Right-handed 310
Helix 26	AC8	A	183	191	Right-handed alpha

There are 36 sheets in PDB entry 5DUR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	101	anti-parallel
Strand 4	H	35	41	anti-parallel
Strand 5	H	48	54	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	101	anti-parallel
Strand 4	H	107	111	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	144	153	anti-parallel
Strand 3	H	184	192	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	144	153	anti-parallel
Strand 3	H	184	192	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	202	208	anti-parallel
Strand 3	H	213	219	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	107	111	parallel
Strand 3	L	87	94	anti-parallel
Strand 4	L	36	40	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	107	111	parallel
Strand 3	L	87	94	anti-parallel
Strand 4	L	100	103	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	124	first strand
Strand 2	L	136	145	anti-parallel
Strand 3	L	178	186	anti-parallel
Strand 4	L	165	167	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	124	first strand
Strand 2	L	136	145	anti-parallel
Strand 3	L	178	186	anti-parallel
Strand 4	L	171	172	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	159	160	first strand
Strand 2	L	151	156	anti-parallel
Strand 3	L	197	203	anti-parallel
Strand 4	L	206	212	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	79	80	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	225	233	parallel
Strand 3	C	172	180	anti-parallel
Strand 4	C	252	259	anti-parallel
Strand 5	C	108	115	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	225	233	parallel
Strand 3	C	172	180	anti-parallel
Strand 4	C	247	250	anti-parallel
Strand 5	C	147	149	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	151	152	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	137	first strand
Strand 2	C	140	142	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	165	first strand
Strand 2	C	238	243	anti-parallel
Strand 3	C	198	202	anti-parallel
Strand 4	C	205	209	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	48	53	anti-parallel
Strand 6	B	59	61	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	108	111	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	144	153	anti-parallel
Strand 3	B	184	192	anti-parallel
Strand 4	B	171	173	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	144	153	anti-parallel
Strand 3	B	184	192	anti-parallel
Strand 4	B	177	178	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	218	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	36	40	anti-parallel
Strand 5	D	47	50	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	100	103	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	136	145	anti-parallel
Strand 3	D	178	186	anti-parallel
Strand 4	D	165	167	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	136	145	anti-parallel
Strand 3	D	178	186	anti-parallel
Strand 4	D	171	172	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	151	156	anti-parallel
Strand 3	D	197	203	anti-parallel
Strand 4	D	206	212	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	79	80	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	225	233	parallel
Strand 3	A	172	180	anti-parallel
Strand 4	A	252	259	anti-parallel
Strand 5	A	108	115	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	225	233	parallel
Strand 3	A	172	180	anti-parallel
Strand 4	A	247	250	anti-parallel
Strand 5	A	147	149	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	151	152	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	140	142	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	165	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	198	202	anti-parallel
Strand 4	A	205	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DUR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DUR