Analysis of interatomic Contacts of Structural Units in PDB entry:
5DV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DV2 entry

There is 1 chain in PDB entry 5DV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 169PRO 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5DV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
198 202Right-handed 310
Helix 2
AA2
A
211 216Right-handed alpha
Helix 3
AA3
A
216 232Right-handed alpha
Helix 4
AA4
A
243 249Right-handed alpha
Helix 5
AA5
A
249 257Right-handed alpha
Helix 6
AA6
A
273 280Right-handed alpha
Helix 7
AA7
A
302 309Right-handed alpha
Helix 8
AA8
A
313 320Right-handed alpha
Helix 9
AA9
A
336 339Right-handed 310
Helix 10
AB1
A
367 388Right-handed alpha
Helix 11
AB2
A
417 426Right-handed alpha
Helix 12
AB3
A
432 436Right-handed 310
Helix 13
AB4
A
441 448Right-handed 310
Helix 14
AB5
A
509 516Right-handed alpha
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There are 4 sheets in PDB entry 5DV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
499 505anti-parallel
Strand 3
A
533 539anti-parallel
Strand 4
A
187 195anti-parallel
Strand 5
A
235 242parallel
Strand 6
A
281 288anti-parallel
Strand 7
A
259 265anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 301first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
352 360anti-parallel
Strand 4
A
405 410parallel
Strand 5
A
490 495anti-parallel
Strand 6
A
467 469anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
461 462anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
486 487anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il