Analysis of interatomic Contacts of Structural Units in PDB entry:
5DV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DV8 entry

There are 2 chains in PDB entry 5DV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 206TYR 477
B
 HIS 687GLU 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5DV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
207 226Right-handed alpha
Helix 2
AA2
A
229 239Right-handed alpha
Helix 3
AA3
A
251 258Right-handed alpha
Helix 4
AA4
A
258 263Right-handed alpha
Helix 5
AA5
A
276 303Right-handed alpha
Helix 6
AA6
A
310 333Right-handed alpha
Helix 7
AA7
A
342 344Right-handed 310
Helix 8
AA8
A
350 355Right-handed alpha
Helix 9
AA9
A
359 363Right-handed 310
Helix 10
AB1
A
364 376Right-handed alpha
Helix 11
AB2
A
380 393Right-handed alpha
Helix 12
AB3
A
402 425Right-handed alpha
Helix 13
AB4
A
430 460Right-handed alpha
Helix 14
AB5
A
466 474Right-handed alpha
Helix 15
AB6
B
688 696Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5DV8.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
Strand 4
A
334 335anti-parallel
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