Analysis of interatomic Contacts of Structural Units in PDB entry:
5DV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DV9 entry

There is 1 chain in PDB entry 5DV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LYS 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5DV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 35Right-handed alpha
Helix 2
AA2
A
53 71Right-handed alpha
Helix 3
AA3
A
88 98Right-handed alpha
Helix 4
AA4
A
110 122Right-handed alpha
Helix 5
AA5
A
132 141Right-handed alpha
Helix 6
AA6
A
164 172Right-handed alpha
Helix 7
AA7
A
212 224Right-handed alpha
Helix 8
AA8
A
245 258Right-handed alpha
Helix 9
AA9
A
269 280Right-handed alpha
Helix 10
AB1
A
288 298Right-handed alpha
Helix 11
AB2
A
300 304Right-handed 310
Helix 12
AB3
A
320 331Right-handed alpha
Helix 13
AB4
A
342 346Right-handed 310
Helix 14
AB5
A
404 410Right-handed alpha
Helix 15
AB6
A
436 440Right-handed 310
Helix 16
AB7
A
450 460Right-handed alpha
Helix 17
AB8
A
494 504Right-handed alpha
Helix 18
AB9
A
505 506Right-handed 310
Helix 19
AC1
A
507 511Right-handed 310
Helix 20
AC2
A
531 543Right-handed alpha
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There are 7 sheets in PDB entry 5DV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
370 374anti-parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
418 426anti-parallel
Strand 5
A
432 434anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
261 264parallel
Strand 4
A
236 240parallel
Strand 5
A
284 287parallel
Strand 6
A
311 313parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
77 81parallel
Strand 3
A
125 128parallel
Strand 4
A
148 151parallel
Strand 5
A
162 163parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
400 401anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
350 351anti-parallel
Strand 3
A
364 365anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
447 449anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 473first strand
Strand 2
A
479 487anti-parallel
Strand 3
A
515 518parallel
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