Analysis of interatomic Contacts of Structural Units in PDB entry:
5DVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DVF entry

There are 2 chains in PDB entry 5DVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 26ARG 421
B
 ASN 26ARG 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5DVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 55Right-handed alpha
Helix 2
AA2
A
72 82Right-handed alpha
Helix 3
AA3
A
94 102Right-handed alpha
Helix 4
AA4
A
108 115Right-handed alpha
Helix 5
AA5
A
116 121Right-handed alpha
Helix 6
AA6
A
122 129Right-handed alpha
Helix 7
AA7
A
151 159Right-handed alpha
Helix 8
AA8
A
165 179Right-handed alpha
Helix 9
AA9
A
189 215Right-handed alpha
Helix 10
AB1
A
218 223Right-handed alpha
Helix 11
AB2
A
224 239Right-handed alpha
Helix 12
AB3
A
249 259Right-handed alpha
Helix 13
AB4
A
268 270Right-handed 310
Helix 14
AB5
A
271 278Right-handed alpha
Helix 15
AB6
A
312 326Right-handed alpha
Helix 16
AB7
A
328 338Right-handed alpha
Helix 17
AB8
A
349 353Right-handed 310
Helix 18
AB9
A
354 370Right-handed alpha
Helix 19
AC1
A
384 400Right-handed alpha
Helix 20
AC2
A
405 421Right-handed alpha
Helix 21
AC3
B
38 55Right-handed alpha
Helix 22
AC4
B
72 81Right-handed alpha
Helix 23
AC5
B
94 102Right-handed alpha
Helix 24
AC6
B
108 115Right-handed alpha
Helix 25
AC7
B
116 121Right-handed alpha
Helix 26
AC8
B
122 129Right-handed alpha
Helix 27
AC9
B
151 159Right-handed alpha
Helix 28
AD1
B
165 179Right-handed alpha
Helix 29
AD2
B
189 215Right-handed alpha
Helix 30
AD3
B
218 223Right-handed alpha
Helix 31
AD4
B
224 239Right-handed alpha
Helix 32
AD5
B
249 259Right-handed alpha
Helix 33
AD6
B
268 270Right-handed 310
Helix 34
AD7
B
271 278Right-handed alpha
Helix 35
AD8
B
312 327Right-handed alpha
Helix 36
AD9
B
328 340Right-handed alpha
Helix 37
AE1
B
349 353Right-handed 310
Helix 38
AE2
B
354 369Right-handed alpha
Helix 39
AE3
B
384 400Right-handed alpha
Helix 40
AE4
B
405 421Right-handed alpha
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There are 8 sheets in PDB entry 5DVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
29 33parallel
Strand 3
A
88 90parallel
Strand 4
A
298 307anti-parallel
Strand 5
A
137 144anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
29 33parallel
Strand 3
A
88 90parallel
Strand 4
A
298 307anti-parallel
Strand 5
A
373 375parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
134 135anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
262 266parallel
Strand 3
A
147 150anti-parallel
Strand 4
A
287 290anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
29 33parallel
Strand 3
B
88 90parallel
Strand 4
B
298 307anti-parallel
Strand 5
B
137 144anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
29 33parallel
Strand 3
B
88 90parallel
Strand 4
B
298 307anti-parallel
Strand 5
B
373 375parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
134 135anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
262 266parallel
Strand 3
B
147 150anti-parallel
Strand 4
B
287 290anti-parallel
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