Analysis of interatomic Contacts of Structural Units in PDB entry:
5DVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DVJ entry

There are 2 chains in PDB entry 5DVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 26	ARG 421
B	ASN 26	ARG 421

There are 38 helices in PDB entry 5DVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	55	Right-handed alpha
Helix 2	AA2	A	69	80	Right-handed alpha
Helix 3	AA3	A	94	103	Right-handed alpha
Helix 4	AA4	A	108	115	Right-handed alpha
Helix 5	AA5	A	116	121	Right-handed alpha
Helix 6	AA6	A	122	129	Right-handed alpha
Helix 7	AA7	A	151	159	Right-handed alpha
Helix 8	AA8	A	165	179	Right-handed alpha
Helix 9	AA9	A	189	215	Right-handed alpha
Helix 10	AB1	A	218	223	Right-handed alpha
Helix 11	AB2	A	224	239	Right-handed alpha
Helix 12	AB3	A	249	259	Right-handed alpha
Helix 13	AB4	A	270	278	Right-handed alpha
Helix 14	AB5	A	312	327	Right-handed alpha
Helix 15	AB6	A	328	340	Right-handed alpha
Helix 16	AB7	A	349	353	Right-handed 310
Helix 17	AB8	A	354	369	Right-handed alpha
Helix 18	AB9	A	384	400	Right-handed alpha
Helix 19	AC1	A	405	421	Right-handed alpha
Helix 20	AC2	B	38	55	Right-handed alpha
Helix 21	AC3	B	69	80	Right-handed alpha
Helix 22	AC4	B	94	102	Right-handed alpha
Helix 23	AC5	B	108	115	Right-handed alpha
Helix 24	AC6	B	116	121	Right-handed alpha
Helix 25	AC7	B	122	129	Right-handed alpha
Helix 26	AC8	B	151	159	Right-handed alpha
Helix 27	AC9	B	165	179	Right-handed alpha
Helix 28	AD1	B	189	215	Right-handed alpha
Helix 29	AD2	B	218	223	Right-handed alpha
Helix 30	AD3	B	224	239	Right-handed alpha
Helix 31	AD4	B	249	259	Right-handed alpha
Helix 32	AD5	B	269	278	Right-handed alpha
Helix 33	AD6	B	312	326	Right-handed alpha
Helix 34	AD7	B	328	340	Right-handed alpha
Helix 35	AD8	B	349	353	Right-handed 310
Helix 36	AD9	B	354	369	Right-handed alpha
Helix 37	AE1	B	384	400	Right-handed alpha
Helix 38	AE2	B	405	421	Right-handed alpha

There are 9 sheets in PDB entry 5DVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	58	59	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	32	34	parallel
Strand 3	A	88	90	parallel
Strand 4	A	304	307	anti-parallel
Strand 5	A	137	139	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	134	135	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	298	301	anti-parallel
Strand 3	A	373	375	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	262	266	parallel
Strand 3	A	147	150	anti-parallel
Strand 4	A	287	290	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	29	34	parallel
Strand 3	B	88	90	parallel
Strand 4	B	304	307	anti-parallel
Strand 5	B	137	139	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	134	135	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	144	first strand
Strand 2	B	298	301	anti-parallel
Strand 3	B	373	375	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	184	first strand
Strand 2	B	262	266	parallel
Strand 3	B	147	150	anti-parallel
Strand 4	B	287	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DVJ