Analysis of interatomic Contacts of Structural Units in PDB entry:
5DVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DVX entry

There are 2 chains in PDB entry 5DVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 140ARG 399
B
 TRP 141ASP 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5DVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
148 153Right-handed alpha
Helix 2
AA2
A
154 158Right-handed 310
Helix 3
AA3
A
167 171Right-handed 310
Helix 4
AA4
A
261 266Right-handed alpha
Helix 5
AA5
A
286 294Right-handed alpha
Helix 6
AA6
A
295 300Right-handed 310
Helix 7
AA7
A
312 317Right-handed 310
Helix 8
AA8
A
352 362Right-handed alpha
Helix 9
AA9
B
148 152Right-handed 310
Helix 10
AB1
B
153 158Right-handed 310
Helix 11
AB2
B
167 171Right-handed 310
Helix 12
AB3
B
261 266Right-handed alpha
Helix 13
AB4
B
286 294Right-handed alpha
Helix 14
AB5
B
295 300Right-handed 310
Helix 15
AB6
B
312 317Right-handed 310
Helix 16
AB7
B
352 362Right-handed alpha
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There are 6 sheets in PDB entry 5DVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
240 241parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
387 388parallel
Strand 3
A
324 330anti-parallel
Strand 4
A
338 345anti-parallel
Strand 5
A
272 281parallel
Strand 6
A
248 256anti-parallel
Strand 7
A
218 229anti-parallel
Strand 8
A
202 205anti-parallel
Strand 9
A
193 197anti-parallel
Strand 10
A
305 308anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
211 215anti-parallel
Strand 3
A
218 229anti-parallel
Strand 4
A
248 256anti-parallel
Strand 5
A
272 281anti-parallel
Strand 6
A
349 351parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
240 241parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
387 388parallel
Strand 3
B
324 330anti-parallel
Strand 4
B
338 345anti-parallel
Strand 5
B
272 281parallel
Strand 6
B
248 256anti-parallel
Strand 7
B
218 229anti-parallel
Strand 8
B
202 205anti-parallel
Strand 9
B
193 197anti-parallel
Strand 10
B
305 308anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
211 215anti-parallel
Strand 3
B
218 229anti-parallel
Strand 4
B
248 256anti-parallel
Strand 5
B
272 281anti-parallel
Strand 6
B
349 351parallel
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