Analysis of interatomic Contacts of Structural Units in PDB entry:
5DVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DVY entry

There is 1 chain in PDB entry 5DVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 38GLN 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5DVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 58Right-handed alpha
Helix 2
AA2
A
60 66Right-handed alpha
Helix 3
AA3
A
79 94Right-handed alpha
Helix 4
AA4
A
150 154Right-handed 310
Helix 5
AA5
A
197 200Right-handed 310
Helix 6
AA6
A
203 217Right-handed alpha
Helix 7
AA7
A
220 229Right-handed alpha
Helix 8
AA8
A
267 270Right-handed 310
Helix 9
AA9
A
271 276Right-handed alpha
Helix 10
AB1
A
282 289Right-handed alpha
Helix 11
AB2
A
301 307Right-handed alpha
Helix 12
AB3
A
307 313Right-handed alpha
Helix 13
AB4
A
348 359Right-handed alpha
Helix 14
AB5
A
386 392Right-handed alpha
Helix 15
AB6
A
395 405Right-handed alpha
Helix 16
AB7
A
412 416Right-handed 310
Helix 17
AB8
A
421 423Right-handed 310
Helix 18
AB9
A
424 435Right-handed alpha
Helix 19
AC1
A
454 458Right-handed 310
Helix 20
AC2
A
472 480Right-handed alpha
Helix 21
AC3
A
481 493Right-handed alpha
Helix 22
AC4
A
493 502Right-handed alpha
Helix 23
AC5
A
529 538Right-handed alpha
Helix 24
AC6
A
546 555Right-handed alpha
Helix 25
AC7
A
556 559Right-handed 310
Helix 26
AC8
A
582 599Right-handed alpha
Helix 27
AC9
A
604 611Right-handed 310
Helix 28
AD1
A
662 665Right-handed 310
Helix 29
AD2
A
666 677Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 5DVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 110first strand
Strand 2
A
113 124anti-parallel
Strand 3
A
127 141anti-parallel
Strand 4
A
144 147anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 169first strand
Strand 2
A
316 322anti-parallel
Strand 3
A
328 335anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
183 195anti-parallel
Strand 3
A
255 264anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
183 195anti-parallel
Strand 3
A
176 177anti-parallel
Strand 4
A
343 344parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
297 299anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 382first strand
Strand 2
A
364 369anti-parallel
Strand 3
A
648 653anti-parallel
Strand 4
A
632 640anti-parallel
Strand 5
A
615 623anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
470 471anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 451first strand
Strand 2
A
462 463anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 564first strand
Strand 2
A
576 577anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il