Analysis of interatomic Contacts of Structural Units in PDB entry:
5DW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DW8 entry

There are 2 chains in PDB entry 5DW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 269
B
 SER 0PHE 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5DW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 25Right-handed alpha
Helix 2
AA2
A
36 57Right-handed alpha
Helix 3
AA3
A
87 95Right-handed alpha
Helix 4
AA4
A
146 149Right-handed 310
Helix 5
AA5
A
155 161Right-handed 310
Helix 6
AA6
A
163 175Right-handed alpha
Helix 7
AA7
A
183 193Right-handed alpha
Helix 8
AA8
A
205 219Right-handed alpha
Helix 9
AA9
A
243 254Right-handed alpha
Helix 10
AB1
A
255 257Right-handed 310
Helix 11
AB2
A
258 269Right-handed alpha
Helix 12
AB3
B
1 24Right-handed alpha
Helix 13
AB4
B
39 57Right-handed alpha
Helix 14
AB5
B
87 95Right-handed alpha
Helix 15
AB6
B
146 149Right-handed 310
Helix 16
AB7
B
155 160Right-handed 310
Helix 17
AB8
B
161 175Right-handed alpha
Helix 18
AB9
B
183 193Right-handed alpha
Helix 19
AC1
B
205 219Right-handed alpha
Helix 20
AC2
B
243 255Right-handed alpha
Helix 21
AC3
B
258 270Right-handed alpha
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There are 4 sheets in PDB entry 5DW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
78 86parallel
Strand 3
A
99 106anti-parallel
Strand 4
A
109 117anti-parallel
Strand 5
A
122 127anti-parallel
Strand 6
A
132 134anti-parallel
Strand 7
A
137 138anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
151 153parallel
Strand 3
A
198 204parallel
Strand 4
A
237 242anti-parallel
Strand 5
A
222 224anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
78 86parallel
Strand 3
B
99 106anti-parallel
Strand 4
B
109 117anti-parallel
Strand 5
B
122 127anti-parallel
Strand 6
B
132 134anti-parallel
Strand 7
B
137 138anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 179first strand
Strand 2
B
151 153parallel
Strand 3
B
198 204parallel
Strand 4
B
237 242anti-parallel
Strand 5
B
222 224anti-parallel
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