Analysis of interatomic Contacts of Structural Units in PDB entry:
5DWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DWD entry

There are 2 chains in PDB entry 5DWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5LEU 219
B
 GLY -7LEU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5DWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 45Right-handed alpha
Helix 2
AA2
A
79 106Right-handed alpha
Helix 3
AA3
A
108 110Right-handed 310
Helix 4
AA4
A
118 129Right-handed alpha
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
174 187Right-handed alpha
Helix 7
AA7
A
204 219Right-handed alpha
Helix 8
AA8
B
32 45Right-handed alpha
Helix 9
AA9
B
79 106Right-handed alpha
Helix 10
AB1
B
108 110Right-handed 310
Helix 11
AB2
B
118 129Right-handed alpha
Helix 12
AB3
B
147 155Right-handed alpha
Helix 13
AB4
B
174 187Right-handed alpha
Helix 14
AB5
B
204 219Right-handed alpha
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There are 4 sheets in PDB entry 5DWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
21 26parallel
Strand 4
A
112 117parallel
Strand 5
A
137 141parallel
Strand 6
A
161 166parallel
Strand 7
A
191 196parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
64 69anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
50 53anti-parallel
Strand 3
B
21 26parallel
Strand 4
B
112 117parallel
Strand 5
B
137 141parallel
Strand 6
B
161 166parallel
Strand 7
B
191 196parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
64 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il