Analysis of interatomic Contacts of Structural Units in PDB entry:
5DWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DWS entry

There are 8 chains in PDB entry 5DWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 437GLY 473
B
 GLU 329ILE 338
C
 LEU 435GLN 474
D
 GLU 329ILE 338
E
 GLY 438GLN 472
F
 GLU 329ILE 338
G
 LEU 437GLY 473
H
 PRO 328ILE 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5DWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
468 472Right-handed 310
Helix 2
AA2
B
333 338Right-handed alpha
Helix 3
AA3
C
468 472Right-handed 310
Helix 4
AA4
D
333 338Right-handed alpha
Helix 5
AA5
E
468 472Right-handed 310
Helix 6
AA6
F
333 338Right-handed alpha
Helix 7
AA7
G
468 473Right-handed 310
Helix 8
AA8
H
333 338Right-handed alpha
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There are 4 sheets in PDB entry 5DWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
454 458anti-parallel
Strand 3
A
463 465anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
444 448first strand
Strand 2
C
454 458anti-parallel
Strand 3
C
463 465anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
444 448first strand
Strand 2
E
454 458anti-parallel
Strand 3
E
463 465anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
444 448first strand
Strand 2
G
454 458anti-parallel
Strand 3
G
463 465anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il