Analysis of interatomic Contacts of Structural Units in PDB entry:
5DWZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DWZ entry

There are 8 chains in PDB entry 5DWZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 1	CYS 348
B	MET 1	ALA 278
D	GLY 1	CYS 348
A	MET 1	ALA 278
F	GLY 1	CYS 348
E	MET 1	GLY 279
H	GLY 1	CYS 348
G	MET 1	GLY 279

There are100 helices in PDB entry 5DWZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	22	26	Right-handed 310
Helix 2	AA2	C	32	40	Right-handed alpha
Helix 3	AA3	C	48	52	Right-handed 310
Helix 4	AA4	C	56	70	Right-handed alpha
Helix 5	AA5	C	73	77	Right-handed 310
Helix 6	AA6	C	107	116	Right-handed alpha
Helix 7	AA7	C	127	129	Right-handed 310
Helix 8	AA8	C	130	145	Right-handed alpha
Helix 9	AA9	C	167	172	Right-handed 310
Helix 10	AB1	C	203	205	Right-handed 310
Helix 11	AB2	C	243	257	Right-handed alpha
Helix 12	AB3	C	259	263	Right-handed 310
Helix 13	AB4	C	272	284	Right-handed alpha
Helix 14	AB5	C	286	290	Right-handed 310
Helix 15	AB6	C	293	298	Right-handed alpha
Helix 16	AB7	C	300	302	Right-handed 310
Helix 17	AB8	C	303	315	Right-handed alpha
Helix 18	AB9	B	34	50	Right-handed alpha
Helix 19	AC1	B	52	56	Right-handed 310
Helix 20	AC2	B	80	89	Right-handed alpha
Helix 21	AC3	B	102	117	Right-handed alpha
Helix 22	AC4	B	201	215	Right-handed alpha
Helix 23	AC5	B	232	236	Right-handed 310
Helix 24	AC6	B	238	241	Right-handed 310
Helix 25	AC7	B	242	253	Right-handed alpha
Helix 26	AC8	D	22	26	Right-handed 310
Helix 27	AC9	D	32	40	Right-handed alpha
Helix 28	AD1	D	48	52	Right-handed 310
Helix 29	AD2	D	56	70	Right-handed alpha
Helix 30	AD3	D	73	77	Right-handed 310
Helix 31	AD4	D	106	115	Right-handed alpha
Helix 32	AD5	D	127	129	Right-handed 310
Helix 33	AD6	D	130	145	Right-handed alpha
Helix 34	AD7	D	167	172	Right-handed 310
Helix 35	AD8	D	203	205	Right-handed 310
Helix 36	AD9	D	243	256	Right-handed alpha
Helix 37	AE1	D	259	263	Right-handed 310
Helix 38	AE2	D	272	283	Right-handed alpha
Helix 39	AE3	D	286	290	Right-handed 310
Helix 40	AE4	D	293	298	Right-handed alpha
Helix 41	AE5	D	300	302	Right-handed 310
Helix 42	AE6	D	303	315	Right-handed alpha
Helix 43	AE7	A	33	50	Right-handed alpha
Helix 44	AE8	A	52	56	Right-handed 310
Helix 45	AE9	A	80	89	Right-handed alpha
Helix 46	AF1	A	102	117	Right-handed alpha
Helix 47	AF2	A	201	215	Right-handed alpha
Helix 48	AF3	A	232	236	Right-handed 310
Helix 49	AF4	A	238	241	Right-handed 310
Helix 50	AF5	A	242	253	Right-handed alpha
Helix 51	AF6	F	22	26	Right-handed 310
Helix 52	AF7	F	32	40	Right-handed alpha
Helix 53	AF8	F	48	52	Right-handed 310
Helix 54	AF9	F	56	70	Right-handed alpha
Helix 55	AG1	F	73	77	Right-handed 310
Helix 56	AG2	F	106	115	Right-handed alpha
Helix 57	AG3	F	127	129	Right-handed 310
Helix 58	AG4	F	130	145	Right-handed alpha
Helix 59	AG5	F	167	172	Right-handed 310
Helix 60	AG6	F	203	205	Right-handed 310
Helix 61	AG7	F	243	256	Right-handed alpha
Helix 62	AG8	F	259	263	Right-handed 310
Helix 63	AG9	F	272	284	Right-handed alpha
Helix 64	AH1	F	286	290	Right-handed 310
Helix 65	AH2	F	293	298	Right-handed alpha
Helix 66	AH3	F	300	302	Right-handed 310
Helix 67	AH4	F	303	315	Right-handed alpha
Helix 68	AH5	E	33	50	Right-handed alpha
Helix 69	AH6	E	52	56	Right-handed 310
Helix 70	AH7	E	80	89	Right-handed alpha
Helix 71	AH8	E	102	117	Right-handed alpha
Helix 72	AH9	E	201	215	Right-handed alpha
Helix 73	AI1	E	232	236	Right-handed 310
Helix 74	AI2	E	238	241	Right-handed 310
Helix 75	AI3	E	242	253	Right-handed alpha
Helix 76	AI4	H	22	26	Right-handed 310
Helix 77	AI5	H	32	40	Right-handed alpha
Helix 78	AI6	H	48	52	Right-handed 310
Helix 79	AI7	H	56	70	Right-handed alpha
Helix 80	AI8	H	73	77	Right-handed 310
Helix 81	AI9	H	107	115	Right-handed alpha
Helix 82	AJ1	H	127	129	Right-handed 310
Helix 83	AJ2	H	130	145	Right-handed alpha
Helix 84	AJ3	H	167	172	Right-handed 310
Helix 85	AJ4	H	203	205	Right-handed 310
Helix 86	AJ5	H	243	256	Right-handed alpha
Helix 87	AJ6	H	259	263	Right-handed 310
Helix 88	AJ7	H	272	284	Right-handed alpha
Helix 89	AJ8	H	286	290	Right-handed 310
Helix 90	AJ9	H	293	298	Right-handed alpha
Helix 91	AK1	H	300	302	Right-handed 310
Helix 92	AK2	H	303	315	Right-handed alpha
Helix 93	AK3	G	33	50	Right-handed alpha
Helix 94	AK4	G	52	56	Right-handed 310
Helix 95	AK5	G	80	89	Right-handed alpha
Helix 96	AK6	G	102	117	Right-handed alpha
Helix 97	AK7	G	201	215	Right-handed alpha
Helix 98	AK8	G	232	236	Right-handed 310
Helix 99	AK9	G	238	241	Right-handed 310
Helix 100	AL1	G	242	253	Right-handed alpha

There are 34 sheets in PDB entry 5DWZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	124	first strand
Strand 2	C	79	83	parallel
Strand 3	C	150	157	parallel
Strand 4	C	176	184	anti-parallel
Strand 5	C	4	12	anti-parallel
Strand 6	C	346	347	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	19	first strand
Strand 2	C	43	45	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	B	178	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	199	first strand
Strand 2	C	334	341	anti-parallel
Strand 3	C	323	330	anti-parallel
Strand 4	C	265	268	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	222	230	anti-parallel
Strand 4	F	223	231	anti-parallel
Strand 5	F	207	211	anti-parallel
Strand 6	E	75	77	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	58	62	parallel
Strand 3	B	122	128	parallel
Strand 4	B	146	153	anti-parallel
Strand 5	B	2	9	anti-parallel
Strand 6	B	269	277	parallel
Strand 7	B	160	164	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	58	62	parallel
Strand 3	B	122	128	parallel
Strand 4	B	146	153	anti-parallel
Strand 5	B	2	9	anti-parallel
Strand 6	B	269	277	parallel
Strand 7	B	257	264	anti-parallel
Strand 8	B	222	224	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	23	26	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	192	193	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	124	first strand
Strand 2	D	79	83	parallel
Strand 3	D	150	157	parallel
Strand 4	D	176	185	anti-parallel
Strand 5	D	3	12	anti-parallel
Strand 6	D	346	347	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	19	first strand
Strand 2	D	43	45	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	104	first strand
Strand 2	A	178	179	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	199	first strand
Strand 2	D	334	341	anti-parallel
Strand 3	D	323	330	anti-parallel
Strand 4	D	265	268	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	D	207	211	anti-parallel
Strand 3	D	223	230	anti-parallel
Strand 4	H	223	231	anti-parallel
Strand 5	H	207	211	anti-parallel
Strand 6	G	75	77	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	58	62	parallel
Strand 3	A	122	128	parallel
Strand 4	A	146	153	anti-parallel
Strand 5	A	2	9	anti-parallel
Strand 6	A	269	277	parallel
Strand 7	A	160	164	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	58	62	parallel
Strand 3	A	122	128	parallel
Strand 4	A	146	153	anti-parallel
Strand 5	A	2	9	anti-parallel
Strand 6	A	269	277	parallel
Strand 7	A	257	264	anti-parallel
Strand 8	A	222	224	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	23	26	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	192	193	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	124	first strand
Strand 2	F	79	83	parallel
Strand 3	F	150	157	parallel
Strand 4	F	176	185	anti-parallel
Strand 5	F	3	12	anti-parallel
Strand 6	F	346	347	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	19	first strand
Strand 2	F	43	45	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	104	first strand
Strand 2	E	178	179	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	199	first strand
Strand 2	F	334	341	anti-parallel
Strand 3	F	323	330	anti-parallel
Strand 4	F	265	268	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	97	first strand
Strand 2	E	58	62	parallel
Strand 3	E	122	128	parallel
Strand 4	E	146	153	anti-parallel
Strand 5	E	2	9	anti-parallel
Strand 6	E	269	277	parallel
Strand 7	E	160	163	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	97	first strand
Strand 2	E	58	62	parallel
Strand 3	E	122	128	parallel
Strand 4	E	146	153	anti-parallel
Strand 5	E	2	9	anti-parallel
Strand 6	E	269	277	parallel
Strand 7	E	257	264	anti-parallel
Strand 8	E	222	224	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	23	26	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	192	193	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	124	first strand
Strand 2	H	79	83	parallel
Strand 3	H	150	157	parallel
Strand 4	H	176	184	anti-parallel
Strand 5	H	4	12	anti-parallel
Strand 6	H	346	347	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	19	first strand
Strand 2	H	43	45	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	104	first strand
Strand 2	G	178	179	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	191	199	first strand
Strand 2	H	334	341	anti-parallel
Strand 3	H	323	330	anti-parallel
Strand 4	H	265	268	parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	97	first strand
Strand 2	G	58	62	parallel
Strand 3	G	122	128	parallel
Strand 4	G	146	153	anti-parallel
Strand 5	G	2	9	anti-parallel
Strand 6	G	269	277	parallel
Strand 7	G	160	164	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	97	first strand
Strand 2	G	58	62	parallel
Strand 3	G	122	128	parallel
Strand 4	G	146	153	anti-parallel
Strand 5	G	2	9	anti-parallel
Strand 6	G	269	277	parallel
Strand 7	G	257	264	anti-parallel
Strand 8	G	222	224	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	17	first strand
Strand 2	G	23	26	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	134	first strand
Strand 2	G	192	193	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DWZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DWZ