Analysis of interatomic Contacts of Structural Units in PDB entry:
5DX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DX5 entry

There are 2 chains in PDB entry 5DX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 400
B
 GLU 2VAL 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5DX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
8 16Right-handed alpha
Helix 3
AA3
A
41 50Right-handed alpha
Helix 4
AA4
A
63 78Right-handed alpha
Helix 5
AA5
A
87 100Right-handed alpha
Helix 6
AA6
A
113 122Right-handed alpha
Helix 7
AA7
A
124 128Right-handed 310
Helix 8
AA8
A
138 146Right-handed alpha
Helix 9
AA9
A
167 179Right-handed alpha
Helix 10
AB1
A
197 202Right-handed 310
Helix 11
AB2
A
228 238Right-handed alpha
Helix 12
AB3
A
249 261Right-handed alpha
Helix 13
AB4
A
262 283Right-handed alpha
Helix 14
AB5
A
300 308Right-handed alpha
Helix 15
AB6
A
322 331Right-handed alpha
Helix 16
AB7
A
351 355Right-handed 310
Helix 17
AB8
A
361 368Right-handed alpha
Helix 18
AB9
A
383 397Right-handed alpha
Helix 19
AC1
B
3 7Right-handed 310
Helix 20
AC2
B
8 16Right-handed alpha
Helix 21
AC3
B
41 50Right-handed alpha
Helix 22
AC4
B
63 78Right-handed alpha
Helix 23
AC5
B
87 100Right-handed alpha
Helix 24
AC6
B
113 123Right-handed alpha
Helix 25
AC7
B
124 128Right-handed 310
Helix 26
AC8
B
138 146Right-handed alpha
Helix 27
AC9
B
167 179Right-handed alpha
Helix 28
AD1
B
197 202Right-handed 310
Helix 29
AD2
B
228 238Right-handed alpha
Helix 30
AD3
B
249 261Right-handed alpha
Helix 31
AD4
B
262 283Right-handed alpha
Helix 32
AD5
B
300 308Right-handed alpha
Helix 33
AD6
B
322 331Right-handed alpha
Helix 34
AD7
B
351 355Right-handed 310
Helix 35
AD8
B
361 369Right-handed alpha
Helix 36
AD9
B
383 397Right-handed alpha
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There are 4 sheets in PDB entry 5DX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
223 227anti-parallel
Strand 3
A
205 209anti-parallel
Strand 4
A
183 187parallel
Strand 5
A
150 156parallel
Strand 6
A
105 109parallel
Strand 7
A
130 134parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 291first strand
Strand 2
A
314 319anti-parallel
Strand 3
A
374 378anti-parallel
Strand 4
A
348 350anti-parallel
Strand 5
A
337 338parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 85first strand
Strand 2
B
223 227anti-parallel
Strand 3
B
205 209anti-parallel
Strand 4
B
183 187parallel
Strand 5
B
150 156parallel
Strand 6
B
105 109parallel
Strand 7
B
130 134parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 291first strand
Strand 2
B
314 319anti-parallel
Strand 3
B
374 378anti-parallel
Strand 4
B
348 350anti-parallel
Strand 5
B
337 338parallel
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