Analysis of interatomic Contacts of Structural Units in PDB entry:
5DX6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DX6 entry

There are 2 chains in PDB entry 5DX6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6HIS 554
B
 VAL -5LEU 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 66 helices in PDB entry 5DX6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
34 36Right-handed 310
Helix 3
AA3
A
37 45Right-handed alpha
Helix 4
AA4
A
56 72Right-handed alpha
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
A
88 99Right-handed alpha
Helix 7
AA7
A
110 116Right-handed alpha
Helix 8
AA8
A
123 129Right-handed alpha
Helix 9
AA9
A
130 132Right-handed 310
Helix 10
AB1
A
140 142Right-handed 310
Helix 11
AB2
A
143 157Right-handed alpha
Helix 12
AB3
A
169 174Right-handed alpha
Helix 13
AB4
A
193 207Right-handed alpha
Helix 14
AB5
A
216 222Right-handed 310
Helix 15
AB6
A
223 235Right-handed alpha
Helix 16
AB7
A
266 275Right-handed alpha
Helix 17
AB8
A
284 288Right-handed 310
Helix 18
AB9
A
289 293Right-handed 310
Helix 19
AC1
A
323 334Right-handed alpha
Helix 20
AC2
A
342 361Right-handed alpha
Helix 21
AC3
A
372 384Right-handed alpha
Helix 22
AC4
A
395 404Right-handed alpha
Helix 23
AC5
A
405 408Right-handed 310
Helix 24
AC6
A
424 436Right-handed alpha
Helix 25
AC7
A
447 454Right-handed alpha
Helix 26
AC8
A
455 464Right-handed alpha
Helix 27
AC9
A
477 489Right-handed alpha
Helix 28
AD1
A
500 507Right-handed alpha
Helix 29
AD2
A
520 531Right-handed alpha
Helix 30
AD3
A
542 544Right-handed 310
Helix 31
AD4
A
545 551Right-handed alpha
Helix 32
AD5
B
12 24Right-handed alpha
Helix 33
AD6
B
34 36Right-handed 310
Helix 34
AD7
B
37 45Right-handed alpha
Helix 35
AD8
B
56 72Right-handed alpha
Helix 36
AD9
B
82 87Right-handed alpha
Helix 37
AE1
B
88 99Right-handed alpha
Helix 38
AE2
B
110 114Right-handed 310
Helix 39
AE3
B
116 120Right-handed 310
Helix 40
AE4
B
123 129Right-handed alpha
Helix 41
AE5
B
130 132Right-handed 310
Helix 42
AE6
B
140 142Right-handed 310
Helix 43
AE7
B
143 157Right-handed alpha
Helix 44
AE8
B
169 174Right-handed alpha
Helix 45
AE9
B
193 207Right-handed alpha
Helix 46
AF1
B
216 222Right-handed 310
Helix 47
AF2
B
223 235Right-handed alpha
Helix 48
AF3
B
243 245Right-handed 310
Helix 49
AF4
B
266 275Right-handed alpha
Helix 50
AF5
B
284 288Right-handed 310
Helix 51
AF6
B
289 294Right-handed alpha
Helix 52
AF7
B
323 334Right-handed alpha
Helix 53
AF8
B
342 354Right-handed alpha
Helix 54
AF9
B
372 384Right-handed alpha
Helix 55
AG1
B
395 404Right-handed alpha
Helix 56
AG2
B
405 408Right-handed 310
Helix 57
AG3
B
424 436Right-handed alpha
Helix 58
AG4
B
447 454Right-handed alpha
Helix 59
AG5
B
455 464Right-handed alpha
Helix 60
AG6
B
477 489Right-handed alpha
Helix 61
AG7
B
500 507Right-handed alpha
Helix 62
AG8
B
517 519Right-handed 310
Helix 63
AG9
B
520 531Right-handed alpha
Helix 64
AH1
B
545 551Right-handed alpha
Helix 65
AH2
B
552 553Right-handed 310
Helix 66
AH3
B
554 558Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5DX6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
176 178anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
28 32parallel
Strand 3
A
75 79parallel
Strand 4
A
102 108parallel
Strand 5
A
162 168parallel
Strand 6
A
134 137parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 259first strand
Strand 2
A
238 240parallel
Strand 3
A
210 214parallel
Strand 4
A
277 281parallel
Strand 5
A
299 304parallel
Strand 6
A
318 321parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
389 392parallel
Strand 3
A
441 446parallel
Strand 4
A
467 473parallel
Strand 5
A
535 540parallel
Strand 6
A
511 514parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
176 178anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
28 32parallel
Strand 3
B
75 79parallel
Strand 4
B
102 108parallel
Strand 5
B
162 168parallel
Strand 6
B
134 137parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
238 241parallel
Strand 3
B
210 214parallel
Strand 4
B
277 281parallel
Strand 5
B
299 304parallel
Strand 6
B
318 321parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 414first strand
Strand 2
B
389 392parallel
Strand 3
B
441 446parallel
Strand 4
B
467 473parallel
Strand 5
B
535 540parallel
Strand 6
B
511 514parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il