Analysis of interatomic Contacts of Structural Units in PDB entry:
5DXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DXD entry

There are 2 chains in PDB entry 5DXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 25TRP 257
B
 GLY 25TRP 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5DXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 62Right-handed 310
Helix 2
AA2
A
233 238Right-handed alpha
Helix 3
AA3
B
58 66Right-handed 310
Helix 4
AA4
B
239 243Right-handed 310
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There are 9 sheets in PDB entry 5DXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
247 257anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
76 78anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
179 187anti-parallel
Strand 4
A
110 119anti-parallel
Strand 5
A
247 257anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
94 102anti-parallel
Strand 3
A
225 232anti-parallel
Strand 4
A
125 133anti-parallel
Strand 5
A
140 146anti-parallel
Strand 6
A
156 160anti-parallel
Strand 7
A
168 172anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
94 102anti-parallel
Strand 3
A
68 69parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 257first strand
Strand 2
B
111 119anti-parallel
Strand 3
B
180 187anti-parallel
Strand 4
B
190 195anti-parallel
Strand 5
B
205 208anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
247 257anti-parallel
Strand 3
B
84 91anti-parallel
Strand 4
B
76 78anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 91first strand
Strand 2
B
94 102anti-parallel
Strand 3
B
45 47anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
223 232anti-parallel
Strand 3
B
94 102anti-parallel
Strand 4
B
68 69parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 232first strand
Strand 2
B
125 133anti-parallel
Strand 3
B
140 146anti-parallel
Strand 4
B
156 160anti-parallel
Strand 5
B
168 172anti-parallel
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