Analysis of interatomic Contacts of Structural Units in PDB entry:
5DXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DXF entry

There are 2 chains in PDB entry 5DXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ILE 528
B
 PRO 18ILE 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5DXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 77Right-handed alpha
Helix 2
AA2
A
120 127Right-handed alpha
Helix 3
AA3
A
146 155Right-handed alpha
Helix 4
AA4
A
155 161Right-handed alpha
Helix 5
AA5
A
172 195Right-handed alpha
Helix 6
AA6
A
206 209Right-handed 310
Helix 7
AA7
A
210 219Right-handed alpha
Helix 8
AA8
A
234 239Right-handed alpha
Helix 9
AA9
A
243 252Right-handed alpha
Helix 10
AB1
A
261 275Right-handed alpha
Helix 11
AB2
A
302 312Right-handed alpha
Helix 12
AB3
A
316 328Right-handed alpha
Helix 13
AB4
A
345 360Right-handed alpha
Helix 14
AB5
A
361 364Right-handed 310
Helix 15
AB6
A
380 399Right-handed alpha
Helix 16
AB7
A
414 425Right-handed alpha
Helix 17
AB8
A
438 448Right-handed alpha
Helix 18
AB9
A
461 466Right-handed 310
Helix 19
AC1
A
477 490Right-handed alpha
Helix 20
AC2
A
492 510Right-handed alpha
Helix 21
AC3
A
511 527Right-handed alpha
Helix 22
AC4
B
65 78Right-handed alpha
Helix 23
AC5
B
117 127Right-handed alpha
Helix 24
AC6
B
146 161Right-handed alpha
Helix 25
AC7
B
171 195Right-handed alpha
Helix 26
AC8
B
206 209Right-handed 310
Helix 27
AC9
B
210 219Right-handed alpha
Helix 28
AD1
B
234 239Right-handed alpha
Helix 29
AD2
B
243 252Right-handed alpha
Helix 30
AD3
B
261 275Right-handed alpha
Helix 31
AD4
B
302 312Right-handed alpha
Helix 32
AD5
B
316 328Right-handed alpha
Helix 33
AD6
B
345 360Right-handed alpha
Helix 34
AD7
B
380 399Right-handed alpha
Helix 35
AD8
B
414 425Right-handed alpha
Helix 36
AD9
B
438 448Right-handed alpha
Helix 37
AE1
B
462 467Right-handed alpha
Helix 38
AE2
B
477 490Right-handed alpha
Helix 39
AE3
B
492 510Right-handed alpha
Helix 40
AE4
B
511 526Right-handed alpha
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There are 5 sheets in PDB entry 5DXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
84 88parallel
Strand 3
A
34 39parallel
Strand 4
A
200 204parallel
Strand 5
A
223 227parallel
Strand 6
A
256 259parallel
Strand 7
A
290 296parallel
Strand 8
A
284 287anti-parallel
Strand 9
A
279 280anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 339first strand
Strand 2
A
367 374parallel
Strand 3
A
406 409parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
455 458parallel
Strand 3
A
471 473parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
82 88parallel
Strand 3
B
32 39parallel
Strand 4
B
200 204parallel
Strand 5
B
223 228parallel
Strand 6
B
256 259parallel
Strand 7
B
290 296parallel
Strand 8
B
284 287anti-parallel
Strand 9
B
279 281anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 409first strand
Strand 2
B
367 374parallel
Strand 3
B
332 339parallel
Strand 4
B
427 429parallel
Strand 5
B
455 458parallel
Strand 6
B
471 473parallel
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