Analysis of interatomic Contacts of Structural Units in PDB entry:
5DXH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DXH entry

There are 3 chains in PDB entry 5DXH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	ILE 1062
B	GLN 457	ARG 577
D	PRO 2	VAL 105

There are 96 helices in PDB entry 5DXH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	54	Right-handed alpha
Helix 2	AA2	A	58	62	Right-handed 310
Helix 3	AA3	A	64	68	Right-handed 310
Helix 4	AA4	A	88	92	Right-handed 310
Helix 5	AA5	A	107	122	Right-handed alpha
Helix 6	AA6	A	125	131	Right-handed alpha
Helix 7	AA7	A	133	143	Right-handed alpha
Helix 8	AA8	A	143	155	Right-handed alpha
Helix 9	AA9	A	157	167	Right-handed alpha
Helix 10	AB1	A	178	183	Right-handed alpha
Helix 11	AB2	A	184	187	Right-handed 310
Helix 12	AB3	A	216	230	Right-handed alpha
Helix 13	AB4	A	235	247	Right-handed alpha
Helix 14	AB5	A	266	269	Right-handed 310
Helix 15	AB6	A	270	280	Right-handed alpha
Helix 16	AB7	A	290	295	Right-handed alpha
Helix 17	AB8	A	394	396	Right-handed 310
Helix 18	AB9	A	488	497	Right-handed alpha
Helix 19	AC1	A	524	537	Right-handed alpha
Helix 20	AC2	A	544	554	Right-handed alpha
Helix 21	AC3	A	555	563	Right-handed 310
Helix 22	AC4	A	564	570	Right-handed alpha
Helix 23	AC5	A	576	589	Right-handed alpha
Helix 24	AC6	A	594	599	Right-handed alpha
Helix 25	AC7	A	600	603	Right-handed 310
Helix 26	AC8	A	608	623	Right-handed alpha
Helix 27	AC9	A	624	631	Right-handed alpha
Helix 28	AD1	A	631	638	Right-handed alpha
Helix 29	AD2	A	639	642	Right-handed 310
Helix 30	AD3	A	647	658	Right-handed alpha
Helix 31	AD4	A	660	673	Right-handed alpha
Helix 32	AD5	A	680	695	Right-handed alpha
Helix 33	AD6	A	697	721	Right-handed alpha
Helix 34	AD7	A	727	741	Right-handed alpha
Helix 35	AD8	A	741	748	Right-handed alpha
Helix 36	AD9	A	765	769	Right-handed 310
Helix 37	AE1	A	789	793	Right-handed 310
Helix 38	AE2	A	807	828	Right-handed alpha
Helix 39	AE3	A	857	862	Right-handed alpha
Helix 40	AE4	A	875	885	Right-handed alpha
Helix 41	AE5	A	888	912	Right-handed alpha
Helix 42	AE6	A	957	965	Right-handed alpha
Helix 43	AE7	A	974	993	Right-handed alpha
Helix 44	AE8	A	994	1004	Right-handed alpha
Helix 45	AE9	A	1015	1026	Right-handed alpha
Helix 46	AF1	A	1031	1046	Right-handed alpha
Helix 47	AF2	B	458	514	Right-handed alpha
Helix 48	AF3	B	517	577	Right-handed alpha
Helix 49	AF4	D	41	54	Right-handed alpha
Helix 50	AF5	D	64	68	Right-handed 310
Helix 51	AF6	D	88	92	Right-handed 310
Helix 52	AF7	D	107	122	Right-handed alpha
Helix 53	AF8	D	125	131	Right-handed alpha
Helix 54	AF9	D	133	143	Right-handed alpha
Helix 55	AG1	D	143	156	Right-handed alpha
Helix 56	AG2	D	157	167	Right-handed alpha
Helix 57	AG3	D	178	183	Right-handed alpha
Helix 58	AG4	D	184	187	Right-handed 310
Helix 59	AG5	D	216	230	Right-handed alpha
Helix 60	AG6	D	235	246	Right-handed alpha
Helix 61	AG7	D	266	269	Right-handed 310
Helix 62	AG8	D	270	280	Right-handed alpha
Helix 63	AG9	D	290	295	Right-handed alpha
Helix 64	AH1	D	394	396	Right-handed 310
Helix 65	AH2	D	488	497	Right-handed alpha
Helix 66	AH3	D	524	537	Right-handed alpha
Helix 67	AH4	D	544	554	Right-handed alpha
Helix 68	AH5	D	555	563	Right-handed 310
Helix 69	AH6	D	564	570	Right-handed alpha
Helix 70	AH7	D	576	589	Right-handed alpha
Helix 71	AH8	D	594	599	Right-handed alpha
Helix 72	AH9	D	600	603	Right-handed 310
Helix 73	AI1	D	608	623	Right-handed alpha
Helix 74	AI2	D	624	631	Right-handed alpha
Helix 75	AI3	D	631	638	Right-handed alpha
Helix 76	AI4	D	639	642	Right-handed 310
Helix 77	AI5	D	647	658	Right-handed alpha
Helix 78	AI6	D	660	674	Right-handed alpha
Helix 79	AI7	D	675	677	Right-handed 310
Helix 80	AI8	D	680	695	Right-handed alpha
Helix 81	AI9	D	697	721	Right-handed alpha
Helix 82	AJ1	D	727	741	Right-handed alpha
Helix 83	AJ2	D	741	748	Right-handed alpha
Helix 84	AJ3	D	765	769	Right-handed 310
Helix 85	AJ4	D	789	793	Right-handed 310
Helix 86	AJ5	D	807	827	Right-handed alpha
Helix 87	AJ6	D	857	862	Right-handed alpha
Helix 88	AJ7	D	875	885	Right-handed alpha
Helix 89	AJ8	D	888	912	Right-handed alpha
Helix 90	AJ9	D	957	965	Right-handed alpha
Helix 91	AK1	D	974	994	Right-handed alpha
Helix 92	AK2	D	994	1004	Right-handed alpha
Helix 93	AK3	D	1015	1026	Right-handed alpha
Helix 94	AK4	D	1031	1046	Right-handed alpha
Helix 95	AK5	E	453	515	Right-handed alpha
Helix 96	AK6	E	517	574	Right-handed alpha

There are 17 sheets in PDB entry 5DXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	37	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	98	102	parallel
Strand 4	A	69	73	anti-parallel
Strand 5	A	79	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	212	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	284	289	parallel
Strand 4	A	250	254	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	483	485	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	392	first strand
Strand 2	A	333	342	anti-parallel
Strand 3	A	472	477	anti-parallel
Strand 4	A	439	444	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	353	362	anti-parallel
Strand 3	A	376	377	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	353	362	anti-parallel
Strand 3	A	400	409	anti-parallel
Strand 4	A	420	428	anti-parallel
Strand 5	A	446	447	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	752	first strand
Strand 2	A	760	761	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	779	784	anti-parallel
Strand 3	A	796	803	anti-parallel
Strand 4	A	845	849	anti-parallel
Strand 5	A	838	842	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	929	931	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	37	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	98	102	parallel
Strand 4	D	69	73	anti-parallel
Strand 5	D	79	82	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	212	first strand
Strand 2	D	189	198	anti-parallel
Strand 3	D	284	289	parallel
Strand 4	D	250	254	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	326	first strand
Strand 2	D	483	485	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	392	first strand
Strand 2	D	333	342	anti-parallel
Strand 3	D	472	477	anti-parallel
Strand 4	D	439	444	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	372	first strand
Strand 2	D	355	362	anti-parallel
Strand 3	D	400	408	anti-parallel
Strand 4	D	420	428	anti-parallel
Strand 5	D	446	447	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	751	753	first strand
Strand 2	D	756	761	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	770	771	first strand
Strand 2	D	779	784	anti-parallel
Strand 3	D	796	803	anti-parallel
Strand 4	D	845	849	anti-parallel
Strand 5	D	838	842	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	854	856	first strand
Strand 2	D	921	924	anti-parallel
Strand 3	D	929	931	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DXH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DXH