Analysis of interatomic Contacts of Structural Units in PDB entry:
5DXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DXI entry

There are 2 chains in PDB entry 5DXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2VAL 298
B
 TYR 1SER 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5DXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
109 124Right-handed alpha
Helix 6
AA6
A
145 163Right-handed alpha
Helix 7
AA7
A
163 168Right-handed alpha
Helix 8
AA8
A
187 197Right-handed alpha
Helix 9
AA9
A
217 221Right-handed 310
Helix 10
AB1
A
231 251Right-handed alpha
Helix 11
AB2
A
283 296Right-handed alpha
Helix 12
AB3
B
6 17Right-handed alpha
Helix 13
AB4
B
36 40Right-handed 310
Helix 14
AB5
B
43 56Right-handed alpha
Helix 15
AB6
B
68 77Right-handed alpha
Helix 16
AB7
B
109 125Right-handed alpha
Helix 17
AB8
B
145 163Right-handed alpha
Helix 18
AB9
B
163 168Right-handed alpha
Helix 19
AC1
B
187 197Right-handed alpha
Helix 20
AC2
B
217 221Right-handed 310
Helix 21
AC3
B
231 251Right-handed alpha
Helix 22
AC4
B
283 296Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5DXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
90 92anti-parallel
Strand 3
A
82 85anti-parallel
Strand 4
A
59 64parallel
Strand 5
A
20 24parallel
Strand 6
A
224 229parallel
Strand 7
A
263 268parallel
Strand 8
A
279 281parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
137 140anti-parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
170 175anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
90 92anti-parallel
Strand 3
B
82 85anti-parallel
Strand 4
B
59 64parallel
Strand 5
B
20 24parallel
Strand 6
B
224 229parallel
Strand 7
B
263 268parallel
Strand 8
B
279 281parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
137 140anti-parallel
Strand 3
B
178 183anti-parallel
Strand 4
B
170 175anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il