Analysis of interatomic Contacts of Structural Units in PDB entry:
5DXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DXO entry

There are 2 chains in PDB entry 5DXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0SER 271
B
 GLY 0SER 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5DXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
42 55Right-handed alpha
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
86 88Right-handed 310
Helix 5
AA5
A
102 106Right-handed alpha
Helix 6
AA6
A
109 125Right-handed alpha
Helix 7
AA7
A
145 163Right-handed alpha
Helix 8
AA8
A
163 168Right-handed alpha
Helix 9
AA9
A
187 198Right-handed alpha
Helix 10
AB1
A
202 206Right-handed 310
Helix 11
AB2
A
216 228Right-handed alpha
Helix 12
AB3
A
232 234Right-handed 310
Helix 13
AB4
A
256 269Right-handed alpha
Helix 14
AB5
B
5 16Right-handed alpha
Helix 15
AB6
B
35 39Right-handed 310
Helix 16
AB7
B
42 55Right-handed alpha
Helix 17
AB8
B
67 76Right-handed alpha
Helix 18
AB9
B
109 124Right-handed alpha
Helix 19
AC1
B
145 163Right-handed alpha
Helix 20
AC2
B
163 168Right-handed alpha
Helix 21
AC3
B
187 198Right-handed alpha
Helix 22
AC4
B
202 206Right-handed 310
Helix 23
AC5
B
216 228Right-handed alpha
Helix 24
AC6
B
232 234Right-handed 310
Helix 25
AC7
B
256 269Right-handed alpha
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There are 4 sheets in PDB entry 5DXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
90 92anti-parallel
Strand 3
A
81 85anti-parallel
Strand 4
A
58 63parallel
Strand 5
A
19 24parallel
Strand 6
A
209 214parallel
Strand 7
A
236 241parallel
Strand 8
A
252 254parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
137 140anti-parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
170 174anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
90 92anti-parallel
Strand 3
B
82 85anti-parallel
Strand 4
B
58 63parallel
Strand 5
B
19 24parallel
Strand 6
B
209 214parallel
Strand 7
B
236 241parallel
Strand 8
B
252 254parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
137 140anti-parallel
Strand 3
B
178 183anti-parallel
Strand 4
B
170 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il