Analysis of interatomic Contacts of Structural Units in PDB entry:
5DXT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DXT entry

There is 1 chain in PDB entry 5DXT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 107TRP 1051
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5DXT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 122Right-handed alpha
Helix 2
AA2
A
125 130Right-handed alpha
Helix 3
AA3
A
133 143Right-handed alpha
Helix 4
AA4
A
143 156Right-handed alpha
Helix 5
AA5
A
157 167Right-handed alpha
Helix 6
AA6
A
178 183Right-handed alpha
Helix 7
AA7
A
216 231Right-handed alpha
Helix 8
AA8
A
266 269Right-handed 310
Helix 9
AA9
A
270 280Right-handed alpha
Helix 10
AB1
A
290 295Right-handed alpha
Helix 11
AB2
A
305 309Right-handed 310
Helix 12
AB3
A
328 330Right-handed 310
Helix 13
AB4
A
394 396Right-handed 310
Helix 14
AB5
A
488 505Right-handed alpha
Helix 15
AB6
A
507 513Right-handed alpha
Helix 16
AB7
A
524 536Right-handed alpha
Helix 17
AB8
A
544 554Right-handed alpha
Helix 18
AB9
A
554 559Right-handed alpha
Helix 19
AC1
A
560 563Right-handed 310
Helix 20
AC2
A
564 572Right-handed alpha
Helix 21
AC3
A
576 589Right-handed alpha
Helix 22
AC4
A
594 601Right-handed alpha
Helix 23
AC5
A
608 623Right-handed alpha
Helix 24
AC6
A
624 639Right-handed alpha
Helix 25
AC7
A
640 642Right-handed 310
Helix 26
AC8
A
647 660Right-handed alpha
Helix 27
AC9
A
660 674Right-handed alpha
Helix 28
AD1
A
680 695Right-handed alpha
Helix 29
AD2
A
697 720Right-handed alpha
Helix 30
AD3
A
727 740Right-handed alpha
Helix 31
AD4
A
741 748Right-handed alpha
Helix 32
AD5
A
789 793Right-handed 310
Helix 33
AD6
A
807 828Right-handed alpha
Helix 34
AD7
A
857 862Right-handed alpha
Helix 35
AD8
A
875 885Right-handed alpha
Helix 36
AD9
A
886 888Right-handed 310
Helix 37
AE1
A
889 912Right-handed alpha
Helix 38
AE2
A
957 965Right-handed alpha
Helix 39
AE3
A
974 994Right-handed alpha
Helix 40
AE4
A
994 1004Right-handed alpha
Helix 41
AE5
A
1015 1026Right-handed alpha
Helix 42
AE6
A
1031 1048Right-handed alpha
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There are 8 sheets in PDB entry 5DXT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 212first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
482 485parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 342anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
440 444anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
355 362anti-parallel
Strand 3
A
371 372anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
355 362anti-parallel
Strand 3
A
400 408anti-parallel
Strand 4
A
420 428anti-parallel
Strand 5
A
446 447anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
756 761anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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