Analysis of interatomic Contacts of Structural Units in PDB entry:
5DXV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DXV entry

There are 4 chains in PDB entry 5DXV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TYR 139
A
 PHE 141GLU 149
B
 ALA 1TYR 139
B
 PHE 141GLU 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5DXV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 25Right-handed 310
Helix 2
AA2
A
42 53Right-handed alpha
Helix 3
AA3
A
61 68Right-handed alpha
Helix 4
AA4
A
94 103Right-handed alpha
Helix 5
AA5
A
113 121Right-handed alpha
Helix 6
AA6
B
23 25Right-handed 310
Helix 7
AA7
B
42 53Right-handed alpha
Helix 8
AA8
B
61 68Right-handed alpha
Helix 9
AA9
B
94 102Right-handed alpha
Helix 10
AB1
B
113 121Right-handed alpha
Helix 11
AB2
B
122 124Right-handed 310
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There are 2 sheets in PDB entry 5DXV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 34first strand
Strand 2
A
138 146anti-parallel
Strand 3
A
124 132anti-parallel
Strand 4
A
2 9parallel
Strand 5
A
108 112parallel
Strand 6
A
57 60parallel
Strand 7
A
76 79parallel
Strand 8
A
90 92parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 34first strand
Strand 2
B
138 146anti-parallel
Strand 3
B
126 132anti-parallel
Strand 4
B
2 9parallel
Strand 5
B
108 112parallel
Strand 6
B
57 60parallel
Strand 7
B
76 79parallel
Strand 8
B
90 92parallel
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