Analysis of interatomic Contacts of Structural Units in PDB entry:
5DY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DY0 entry

There are 8 chains in PDB entry 5DY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3LYS 222
B
 ALA 4ALA 221
C
 VAL 5LYS 222
D
 ALA 4LYS 222
E
 A 1 C 26
F
 A 1 C 26
G
 A 1 C 26
H
 A 1 C 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5DY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 36Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
53 59Right-handed 310
Helix 4
AA4
A
62 87Right-handed alpha
Helix 5
AA5
A
91 108Right-handed alpha
Helix 6
AA6
A
114 119Right-handed alpha
Helix 7
AA7
A
120 127Right-handed 310
Helix 8
AA8
A
128 151Right-handed alpha
Helix 9
AA9
A
153 156Right-handed 310
Helix 10
AB1
A
157 165Right-handed alpha
Helix 11
AB2
A
166 170Right-handed 310
Helix 12
AB3
A
186 200Right-handed alpha
Helix 13
AB4
A
207 222Right-handed alpha
Helix 14
AB5
B
19 33Right-handed alpha
Helix 15
AB6
B
41 50Right-handed alpha
Helix 16
AB7
B
52 54Right-handed 310
Helix 17
AB8
B
55 60Right-handed alpha
Helix 18
AB9
B
62 88Right-handed alpha
Helix 19
AC1
B
91 108Right-handed alpha
Helix 20
AC2
B
115 120Right-handed alpha
Helix 21
AC3
B
128 151Right-handed alpha
Helix 22
AC4
B
153 156Right-handed 310
Helix 23
AC5
B
157 165Right-handed alpha
Helix 24
AC6
B
166 169Right-handed 310
Helix 25
AC7
B
186 200Right-handed alpha
Helix 26
AC8
B
207 221Right-handed alpha
Helix 27
AC9
C
19 33Right-handed alpha
Helix 28
AD1
C
41 50Right-handed alpha
Helix 29
AD2
C
52 54Right-handed 310
Helix 30
AD3
C
55 60Right-handed alpha
Helix 31
AD4
C
62 86Right-handed alpha
Helix 32
AD5
C
91 108Right-handed alpha
Helix 33
AD6
C
114 120Right-handed alpha
Helix 34
AD7
C
121 127Right-handed 310
Helix 35
AD8
C
128 151Right-handed alpha
Helix 36
AD9
C
153 156Right-handed 310
Helix 37
AE1
C
157 165Right-handed alpha
Helix 38
AE2
C
166 169Right-handed 310
Helix 39
AE3
C
186 200Right-handed alpha
Helix 40
AE4
C
207 222Right-handed alpha
Helix 41
AE5
D
19 35Right-handed alpha
Helix 42
AE6
D
41 50Right-handed alpha
Helix 43
AE7
D
52 54Right-handed 310
Helix 44
AE8
D
55 60Right-handed alpha
Helix 45
AE9
D
62 88Right-handed alpha
Helix 46
AF1
D
91 109Right-handed alpha
Helix 47
AF2
D
114 119Right-handed alpha
Helix 48
AF3
D
120 127Right-handed 310
Helix 49
AF4
D
128 151Right-handed alpha
Helix 50
AF5
D
153 156Right-handed 310
Helix 51
AF6
D
157 164Right-handed alpha
Helix 52
AF7
D
165 170Right-handed alpha
Helix 53
AF8
D
186 200Right-handed alpha
Helix 54
AF9
D
207 222Right-handed alpha
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There are no sheets in PDB entry 5DY0
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il