Analysis of interatomic Contacts of Structural Units in PDB entry:
5DY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DY3 entry

There is 1 chain in PDB entry 5DY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ASP 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5DY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 36Right-handed 310
Helix 2
AA2
A
38 49Right-handed alpha
Helix 3
AA3
A
63 67Right-handed 310
Helix 4
AA4
A
77 94Right-handed alpha
Helix 5
AA5
A
110 118Right-handed 310
Helix 6
AA6
A
151 172Right-handed alpha
Helix 7
AA7
A
185 192Right-handed alpha
Helix 8
AA8
A
205 225Right-handed alpha
Helix 9
AA9
A
246 266Right-handed alpha
Helix 10
AB1
A
294 309Right-handed alpha
Helix 11
AB2
A
320 330Right-handed alpha
Helix 12
AB3
A
339 345Right-handed alpha
Helix 13
AB4
A
347 355Right-handed alpha
Helix 14
AB5
A
362 366Right-handed 310
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There are 4 sheets in PDB entry 5DY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
16 18anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
97 103parallel
Strand 3
A
176 181parallel
Strand 4
A
229 233parallel
Strand 5
A
271 275parallel
Strand 6
A
313 316parallel
Strand 7
A
335 338parallel
Strand 8
A
22 24parallel
Strand 9
A
54 56parallel
Strand 10
A
97 103parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
148 149parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
141 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il