Analysis of interatomic Contacts of Structural Units in PDB entry:
5DYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DYF entry

There is 1 chain in PDB entry 5DYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3VAL 645
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5DYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
95 99Right-handed 310
Helix 3
AA3
A
120 124Right-handed 310
Helix 4
AA4
A
179 183Right-handed 310
Helix 5
AA5
A
215 218Right-handed 310
Helix 6
AA6
A
219 238Right-handed alpha
Helix 7
AA7
A
270 272Right-handed 310
Helix 8
AA8
A
280 297Right-handed alpha
Helix 9
AA9
A
308 310Right-handed 310
Helix 10
AB1
A
311 331Right-handed alpha
Helix 11
AB2
A
332 354Right-handed alpha
Helix 12
AB3
A
367 372Right-handed 310
Helix 13
AB4
A
373 408Right-handed alpha
Helix 14
AB5
A
413 426Right-handed alpha
Helix 15
AB6
A
429 432Right-handed 310
Helix 16
AB7
A
433 438Right-handed alpha
Helix 17
AB8
A
542 553Right-handed alpha
Helix 18
AB9
A
555 581Right-handed alpha
Helix 19
AC1
A
587 600Right-handed alpha
Helix 20
AC2
A
604 612Right-handed alpha
Helix 21
AC3
A
616 621Right-handed alpha
Helix 22
AC4
A
628 647Right-handed alpha
Helix 23
AC5
A
647 663Right-handed alpha
Helix 24
AC6
A
669 690Right-handed alpha
Helix 25
AC7
A
693 700Right-handed alpha
Helix 26
AC8
A
700 705Right-handed alpha
Helix 27
AC9
A
707 719Right-handed alpha
Helix 28
AD1
A
723 737Right-handed alpha
Helix 29
AD2
A
740 754Right-handed alpha
Helix 30
AD3
A
758 767Right-handed alpha
Helix 31
AD4
A
776 789Right-handed alpha
Helix 32
AD5
A
790 795Right-handed alpha
Helix 33
AD6
A
799 814Right-handed alpha
Helix 34
AD7
A
816 824Right-handed alpha
Helix 35
AD8
A
825 828Right-handed 310
Helix 36
AD9
A
829 833Right-handed 310
Helix 37
AE1
A
834 850Right-handed alpha
Helix 38
AE2
A
855 867Right-handed alpha
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There are 11 sheets in PDB entry 5DYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
364 365anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
56 62anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
32 42anti-parallel
Strand 5
A
16 27anti-parallel
Strand 6
A
136 144parallel
Strand 7
A
167 173anti-parallel
Strand 8
A
156 162anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
70 72anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
111 115anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
185 188anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 198first strand
Strand 2
A
204 211anti-parallel
Strand 3
A
245 251parallel
Strand 4
A
264 268parallel
Strand 5
A
258 259anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
411 412parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 517first strand
Strand 2
A
454 462anti-parallel
Strand 3
A
443 451anti-parallel
Strand 4
A
536 538parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 491first strand
Strand 2
A
477 484anti-parallel
Strand 3
A
503 507anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 491first strand
Strand 2
A
477 484anti-parallel
Strand 3
A
524 527anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 495first strand
Strand 2
A
498 500anti-parallel
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