Analysis of interatomic Contacts of Structural Units in PDB entry:
5DYK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DYK entry

There is 1 chain in PDB entry 5DYK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 15	PHE 853

There are 35 helices in PDB entry 5DYK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	35	Right-handed alpha
Helix 2	AA2	A	42	56	Right-handed alpha
Helix 3	AA3	A	63	73	Right-handed alpha
Helix 4	AA4	A	123	127	Right-handed 310
Helix 5	AA5	A	149	173	Right-handed alpha
Helix 6	AA6	A	174	178	Right-handed 310
Helix 7	AA7	A	181	191	Right-handed alpha
Helix 8	AA8	A	241	245	Right-handed 310
Helix 9	AA9	A	267	275	Right-handed alpha
Helix 10	AB1	A	276	293	Right-handed alpha
Helix 11	AB2	A	295	299	Right-handed 310
Helix 12	AB3	A	300	311	Right-handed alpha
Helix 13	AB4	A	360	366	Right-handed alpha
Helix 14	AB5	A	388	396	Right-handed alpha
Helix 15	AB6	A	399	414	Right-handed alpha
Helix 16	AB7	A	416	421	Right-handed alpha
Helix 17	AB8	A	423	433	Right-handed alpha
Helix 18	AB9	A	482	487	Right-handed 310
Helix 19	AC1	A	510	517	Right-handed alpha
Helix 20	AC2	A	518	534	Right-handed alpha
Helix 21	AC3	A	537	539	Right-handed 310
Helix 22	AC4	A	574	580	Right-handed alpha
Helix 23	AC5	A	582	596	Right-handed alpha
Helix 24	AC6	A	625	634	Right-handed alpha
Helix 25	AC7	A	637	658	Right-handed alpha
Helix 26	AC8	A	666	668	Right-handed 310
Helix 27	AC9	A	699	703	Right-handed 310
Helix 28	AD1	A	704	710	Right-handed alpha
Helix 29	AD2	A	715	732	Right-handed alpha
Helix 30	AD3	A	742	753	Right-handed alpha
Helix 31	AD4	A	763	774	Right-handed alpha
Helix 32	AD5	A	777	781	Right-handed 310
Helix 33	AD6	A	789	794	Right-handed alpha
Helix 34	AD7	A	795	799	Right-handed 310
Helix 35	AD8	A	802	808	Right-handed alpha

There are 12 sheets in PDB entry 5DYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	75	79	anti-parallel
Strand 3	A	142	148	anti-parallel
Strand 4	A	94	100	anti-parallel
Strand 5	A	120	121	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	130	131	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	103	105	anti-parallel
Strand 3	A	136	138	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	260	266	anti-parallel
Strand 3	A	212	218	anti-parallel
Strand 4	A	238	239	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	253	256	anti-parallel
Strand 3	A	221	225	anti-parallel
Strand 4	A	228	233	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	316	first strand
Strand 2	A	381	387	anti-parallel
Strand 3	A	331	338	anti-parallel
Strand 4	A	358	359	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	373	377	anti-parallel
Strand 3	A	341	345	anti-parallel
Strand 4	A	348	353	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	439	first strand
Strand 2	A	503	509	anti-parallel
Strand 3	A	454	460	anti-parallel
Strand 4	A	480	481	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	446	first strand
Strand 2	A	495	498	anti-parallel
Strand 3	A	463	467	anti-parallel
Strand 4	A	470	475	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	548	first strand
Strand 2	A	553	560	anti-parallel
Strand 3	A	565	573	anti-parallel
Strand 4	A	613	619	anti-parallel
Strand 5	A	604	609	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	661	first strand
Strand 2	A	687	688	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	672	first strand
Strand 2	A	678	680	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DYK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DYK