Analysis of interatomic Contacts of Structural Units in PDB entry:
5DYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DYN entry

There are 2 chains in PDB entry 5DYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 30ARG 147
B
 TRP 148LYS 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5DYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 61Right-handed alpha
Helix 2
AA2
A
108 123Right-handed alpha
Helix 3
AA3
B
158 166Right-handed alpha
Helix 4
AA4
B
184 191Right-handed alpha
Helix 5
AA5
B
211 220Right-handed alpha
Helix 6
AA6
B
224 240Right-handed alpha
Helix 7
AA7
B
265 275Right-handed alpha
Helix 8
AA8
B
276 281Right-handed alpha
Helix 9
AA9
B
307 315Right-handed alpha
Helix 10
AB1
B
318 330Right-handed alpha
Helix 11
AB2
B
367 375Right-handed alpha
Helix 12
AB3
B
377 384Right-handed alpha
Helix 13
AB4
B
385 388Right-handed 310
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There are 4 sheets in PDB entry 5DYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 100first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
33 40parallel
Strand 5
A
127 133parallel
Strand 6
B
172 178parallel
Strand 7
B
195 200parallel
Strand 8
B
257 262anti-parallel
Strand 9
B
332 337anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
155 157anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
359 360anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 343first strand
Strand 2
B
347 350anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il