Analysis of interatomic Contacts of Structural Units in PDB entry:
5DYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DYY entry

There are 4 chains in PDB entry 5DYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3CYS 65
A
 GLN 67VAL 529
B
 ILE 4CYS 65
B
 GLN 67VAL 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 5DYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 42Right-handed 310
Helix 2
AA2
A
76 81Right-handed alpha
Helix 3
AA3
A
125 129Right-handed 310
Helix 4
AA4
A
130 138Right-handed alpha
Helix 5
AA5
A
148 154Right-handed alpha
Helix 6
AA6
A
165 182Right-handed alpha
Helix 7
AA7
A
183 185Right-handed 310
Helix 8
AA8
A
198 210Right-handed alpha
Helix 9
AA9
A
211 217Right-handed 310
Helix 10
AB1
A
235 250Right-handed alpha
Helix 11
AB2
A
256 267Right-handed alpha
Helix 12
AB3
A
268 274Right-handed alpha
Helix 13
AB4
A
275 280Right-handed 310
Helix 14
AB5
A
302 309Right-handed alpha
Helix 15
AB6
A
326 331Right-handed alpha
Helix 16
AB7
A
346 358Right-handed alpha
Helix 17
AB8
A
362 373Right-handed alpha
Helix 18
AB9
A
383 398Right-handed alpha
Helix 19
AC1
A
398 411Right-handed alpha
Helix 20
AC2
A
431 435Right-handed 310
Helix 21
AC3
A
441 446Right-handed alpha
Helix 22
AC4
A
447 455Right-handed 310
Helix 23
AC5
A
457 478Right-handed alpha
Helix 24
AC6
A
515 525Right-handed alpha
Helix 25
AC7
A
526 529Right-handed 310
Helix 26
AC8
B
38 42Right-handed 310
Helix 27
AC9
B
76 81Right-handed alpha
Helix 28
AD1
B
125 129Right-handed 310
Helix 29
AD2
B
130 138Right-handed alpha
Helix 30
AD3
B
149 154Right-handed alpha
Helix 31
AD4
B
165 182Right-handed alpha
Helix 32
AD5
B
183 185Right-handed 310
Helix 33
AD6
B
198 210Right-handed alpha
Helix 34
AD7
B
211 217Right-handed 310
Helix 35
AD8
B
235 251Right-handed alpha
Helix 36
AD9
B
256 265Right-handed alpha
Helix 37
AE1
B
268 274Right-handed alpha
Helix 38
AE2
B
275 279Right-handed 310
Helix 39
AE3
B
302 310Right-handed alpha
Helix 40
AE4
B
326 331Right-handed alpha
Helix 41
AE5
B
346 358Right-handed alpha
Helix 42
AE6
B
362 373Right-handed alpha
Helix 43
AE7
B
383 398Right-handed alpha
Helix 44
AE8
B
398 411Right-handed alpha
Helix 45
AE9
B
431 435Right-handed 310
Helix 46
AF1
B
441 446Right-handed alpha
Helix 47
AF2
B
447 451Right-handed 310
Helix 48
AF3
B
457 478Right-handed alpha
Helix 49
AF4
B
515 525Right-handed alpha
Helix 50
AF5
B
526 529Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5DYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
55 57parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
23 32anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
140 144anti-parallel
Strand 5
A
107 113parallel
Strand 6
A
187 197parallel
Strand 7
A
219 223parallel
Strand 8
A
317 322parallel
Strand 9
A
416 421parallel
Strand 10
A
499 503parallel
Strand 11
A
510 512anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
11 14anti-parallel
Strand 3
B
55 57parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
23 32anti-parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
140 144anti-parallel
Strand 5
B
107 113parallel
Strand 6
B
187 197parallel
Strand 7
B
219 223parallel
Strand 8
B
317 322parallel
Strand 9
B
416 421parallel
Strand 10
B
499 503parallel
Strand 11
B
510 512anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il