Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DZ6 entry

There is 1 chain in PDB entry 5DZ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5DZ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 24Right-handed alpha
Helix 2
AA2
A
24 36Right-handed alpha
Helix 3
AA3
A
38 46Right-handed alpha
Helix 4
AA4
A
47 52Right-handed 310
Helix 5
AA5
A
53 77Right-handed alpha
Helix 6
AA6
A
88 97Right-handed alpha
Helix 7
AA7
A
101 118Right-handed alpha
Helix 8
AA8
A
131 142Right-handed alpha
Helix 9
AA9
A
164 176Right-handed alpha
Helix 10
AB1
A
194 196Right-handed 310
Helix 11
AB2
A
197 209Right-handed alpha
Helix 12
AB3
A
230 232Right-handed 310
Helix 13
AB4
A
233 241Right-handed alpha
Helix 14
AB5
A
242 244Right-handed 310
Helix 15
AB6
A
248 257Right-handed alpha
Helix 16
AB7
A
270 285Right-handed alpha
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There are 2 sheets in PDB entry 5DZ6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
2 6parallel
Strand 3
A
262 265parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
122 128anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
147 154anti-parallel
Strand 5
A
246 247parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il