Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DZ9 entry

There is 1 chain in PDB entry 5DZ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL -5THR 881
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5DZ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
585 589Right-handed 310
Helix 2
AA2
A
594 600Right-handed alpha
Helix 3
AA3
A
628 630Right-handed 310
Helix 4
AA4
A
639 643Right-handed 310
Helix 5
AA5
A
644 654Right-handed alpha
Helix 6
AA6
A
669 677Right-handed alpha
Helix 7
AA7
A
810 812Right-handed 310
Helix 8
AA8
A
830 835Right-handed alpha
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There are 6 sheets in PDB entry 5DZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 558first strand
Strand 2
A
576 583anti-parallel
Strand 3
A
684 692anti-parallel
Strand 4
A
612 622anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 637first strand
Strand 2
A
662 667anti-parallel
Strand 3
A
602 608anti-parallel
Strand 4
A
698 709anti-parallel
Strand 5
A
712 724anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
729 733first strand
Strand 2
A
751 757anti-parallel
Strand 3
A
845 853anti-parallel
Strand 4
A
783 792anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
814 819first strand
Strand 2
A
824 829anti-parallel
Strand 3
A
772 777anti-parallel
Strand 4
A
857 867anti-parallel
Strand 5
A
870 873anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
814 819first strand
Strand 2
A
824 829anti-parallel
Strand 3
A
772 777anti-parallel
Strand 4
A
857 867anti-parallel
Strand 5
A
877 881anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 797first strand
Strand 2
A
803 804anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il