Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DZB entry

There are 6 chains in PDB entry 5DZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 21LEU 253
B
 MET 21LEU 253
C
 MET 21LEU 253
D
 MET 21LEU 253
E
 MET 21LEU 253
F
 MET 21PRO 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5DZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 33Right-handed alpha
Helix 2
AA2
A
223 229Right-handed 310
Helix 3
AA3
A
238 248Right-handed alpha
Helix 4
AA4
B
22 32Right-handed alpha
Helix 5
AA5
B
223 228Right-handed alpha
Helix 6
AA6
B
238 247Right-handed alpha
Helix 7
AA7
B
248 250Right-handed 310
Helix 8
AA8
C
22 32Right-handed alpha
Helix 9
AA9
C
223 228Right-handed alpha
Helix 10
AB1
C
238 249Right-handed alpha
Helix 11
AB2
D
22 32Right-handed alpha
Helix 12
AB3
D
223 230Right-handed alpha
Helix 13
AB4
D
238 249Right-handed alpha
Helix 14
AB5
E
22 32Right-handed alpha
Helix 15
AB6
E
223 228Right-handed alpha
Helix 16
AB7
E
238 249Right-handed alpha
Helix 17
AB8
F
22 33Right-handed alpha
Helix 18
AB9
F
223 227Right-handed 310
Helix 19
AC1
F
238 248Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5DZB
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il