Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DZR entry

There is 1 chain in PDB entry 5DZR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 114LEU 1106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5DZR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
182 194Right-handed alpha
Helix 2
AA2
A
203 207Right-handed 310
Helix 3
AA3
A
208 222Right-handed alpha
Helix 4
AA4
A
232 247Right-handed alpha
Helix 5
AA5
A
270 280Right-handed alpha
Helix 6
AA6
A
281 285Right-handed 310
Helix 7
AA7
A
295 300Right-handed 310
Helix 8
AA8
A
303 314Right-handed alpha
Helix 9
AA9
A
329 342Right-handed alpha
Helix 10
AB1
A
380 389Right-handed alpha
Helix 11
AB2
A
390 394Right-handed 310
Helix 12
AB3
A
423 424Right-handed 310
Helix 13
AB4
A
425 438Right-handed alpha
Helix 14
AB5
A
450 460Right-handed alpha
Helix 15
AB6
A
461 463Right-handed 310
Helix 16
AB7
A
467 477Right-handed alpha
Helix 17
AB8
A
486 491Right-handed alpha
Helix 18
AB9
A
492 504Right-handed alpha
Helix 19
AC1
A
514 527Right-handed alpha
Helix 20
AC2
A
537 542Right-handed 310
Helix 21
AC3
A
567 576Right-handed alpha
Helix 22
AC4
A
599 607Right-handed alpha
Helix 23
AC5
A
620 630Right-handed alpha
Helix 24
AC6
A
634 642Right-handed alpha
Helix 25
AC7
A
642 669Right-handed alpha
Helix 26
AC8
A
673 691Right-handed alpha
Helix 27
AC9
A
691 700Right-handed alpha
Helix 28
AD1
A
704 708Right-handed 310
Helix 29
AD2
A
815 833Right-handed alpha
Helix 30
AD3
A
850 869Right-handed alpha
Helix 31
AD4
A
877 904Right-handed alpha
Helix 32
AD5
A
908 924Right-handed alpha
Helix 33
AD6
A
934 941Right-handed alpha
Helix 34
AD7
A
949 959Right-handed alpha
Helix 35
AD8
A
961 965Right-handed 310
Helix 36
AD9
A
966 974Right-handed alpha
Helix 37
AE1
A
974 979Right-handed alpha
Helix 38
AE2
A
989 1012Right-handed alpha
Helix 39
AE3
A
1018 1024Right-handed alpha
Helix 40
AE4
A
1030 1039Right-handed alpha
Helix 41
AE5
A
1042 1050Right-handed alpha
Helix 42
AE6
A
1053 1079Right-handed alpha
Helix 43
AE7
A
1081 1092Right-handed alpha
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There are 3 sheets in PDB entry 5DZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
346 349anti-parallel
Strand 3
A
198 201parallel
Strand 4
A
319 324parallel
Strand 5
A
287 293parallel
Strand 6
A
225 230parallel
Strand 7
A
265 269parallel
Strand 8
A
250 253parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
357 363anti-parallel
Strand 3
A
587 593parallel
Strand 4
A
549 552parallel
Strand 5
A
443 446parallel
Strand 6
A
532 535parallel
Strand 7
A
506 509parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 795first strand
Strand 2
A
751 757anti-parallel
Strand 3
A
723 734anti-parallel
Strand 4
A
712 717anti-parallel
Strand 5
A
799 806anti-parallel
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