Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DZS entry

There are 2 chains in PDB entry 5DZS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 270
B
 MET 1GLY 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5DZS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
39 44Right-handed 310
Helix 3
AA3
A
45 54Right-handed alpha
Helix 4
AA4
A
66 72Right-handed 310
Helix 5
AA5
A
76 83Right-handed alpha
Helix 6
AA6
A
100 112Right-handed alpha
Helix 7
AA7
A
127 140Right-handed alpha
Helix 8
AA8
A
166 171Right-handed alpha
Helix 9
AA9
A
186 190Right-handed 310
Helix 10
AB1
A
196 201Right-handed alpha
Helix 11
AB2
A
216 225Right-handed alpha
Helix 12
AB3
A
232 249Right-handed alpha
Helix 13
AB4
A
254 270Right-handed alpha
Helix 14
AB5
B
15 28Right-handed alpha
Helix 15
AB6
B
39 44Right-handed 310
Helix 16
AB7
B
45 54Right-handed alpha
Helix 17
AB8
B
68 72Right-handed 310
Helix 18
AB9
B
76 83Right-handed alpha
Helix 19
AC1
B
100 112Right-handed alpha
Helix 20
AC2
B
127 140Right-handed alpha
Helix 21
AC3
B
168 173Right-handed 310
Helix 22
AC4
B
196 201Right-handed alpha
Helix 23
AC5
B
216 225Right-handed alpha
Helix 24
AC6
B
232 249Right-handed alpha
Helix 25
AC7
B
255 269Right-handed alpha
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There are 4 sheets in PDB entry 5DZS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
2 8parallel
Strand 3
A
57 60parallel
Strand 4
A
87 91anti-parallel
Strand 5
A
94 98anti-parallel
Strand 6
A
74 75parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
144 148parallel
Strand 3
A
120 124parallel
Strand 4
A
177 180parallel
Strand 5
A
205 208parallel
Strand 6
A
228 230parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 37first strand
Strand 2
B
2 8parallel
Strand 3
B
57 60parallel
Strand 4
B
87 91anti-parallel
Strand 5
B
94 98anti-parallel
Strand 6
B
74 75parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
144 149parallel
Strand 3
B
120 124parallel
Strand 4
B
177 180parallel
Strand 5
B
205 208parallel
Strand 6
B
228 230parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il