Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DZT entry

There is 1 chain in PDB entry 5DZT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3GLU 992
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5DZT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed 310
Helix 2
AA2
A
9 20Right-handed alpha
Helix 3
AA3
A
27 35Right-handed alpha
Helix 4
AA4
A
41 53Right-handed alpha
Helix 5
AA5
A
55 63Right-handed alpha
Helix 6
AA6
A
71 81Right-handed alpha
Helix 7
AA7
A
82 95Right-handed alpha
Helix 8
AA8
A
108 110Right-handed 310
Helix 9
AA9
A
111 130Right-handed alpha
Helix 10
AB1
A
133 159Right-handed alpha
Helix 11
AB2
A
160 161Right-handed 310
Helix 12
AB3
A
178 178Right-handed 310
Helix 13
AB4
A
179 187Right-handed alpha
Helix 14
AB5
A
189 200Right-handed alpha
Helix 15
AB6
A
200 237Right-handed alpha
Helix 16
AB7
A
279 294Right-handed alpha
Helix 17
AB8
A
322 343Right-handed alpha
Helix 18
AB9
A
380 388Right-handed alpha
Helix 19
AC1
A
392 397Right-handed 310
Helix 20
AC2
A
470 487Right-handed alpha
Helix 21
AC3
A
488 500Right-handed alpha
Helix 22
AC4
A
511 522Right-handed alpha
Helix 23
AC5
A
524 530Right-handed alpha
Helix 24
AC6
A
530 540Right-handed alpha
Helix 25
AC7
A
541 544Right-handed 310
Helix 26
AC8
A
548 550Right-handed 310
Helix 27
AC9
A
551 561Right-handed alpha
Helix 28
AD1
A
591 602Right-handed alpha
Helix 29
AD2
A
604 619Right-handed alpha
Helix 30
AD3
A
625 630Right-handed alpha
Helix 31
AD4
A
642 664Right-handed alpha
Helix 32
AD5
A
697 712Right-handed alpha
Helix 33
AD6
A
717 730Right-handed alpha
Helix 34
AD7
A
742 745Right-handed 310
Helix 35
AD8
A
746 757Right-handed alpha
Helix 36
AD9
A
759 772Right-handed alpha
Helix 37
AE1
A
792 807Right-handed alpha
Helix 38
AE2
A
809 822Right-handed alpha
Helix 39
AE3
A
837 845Right-handed alpha
Helix 40
AE4
A
851 859Right-handed alpha
Helix 41
AE5
A
876 885Right-handed alpha
Helix 42
AE6
A
898 902Right-handed alpha
Helix 43
AE7
A
913 928Right-handed alpha
Helix 44
AE8
A
928 951Right-handed alpha
Helix 45
AE9
A
969 982Right-handed alpha
Helix 46
AF1
A
987 991Right-handed 310
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There are 7 sheets in PDB entry 5DZT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 247first strand
Strand 2
A
261 265anti-parallel
Strand 3
A
270 274anti-parallel
Strand 4
A
310 313anti-parallel
Strand 5
A
303 305anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
359 361anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 506first strand
Strand 2
A
568 570anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 577first strand
Strand 2
A
583 584anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 668first strand
Strand 2
A
673 675anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 681first strand
Strand 2
A
685 689anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
957 958first strand
Strand 2
A
961 962anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il