Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DZX entry

There are 2 chains in PDB entry 5DZX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	ASN 416
B	ALA 2	VAL 412

There are 12 helices in PDB entry 5DZX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	25	Right-handed alpha
Helix 2	AA2	A	27	34	Right-handed alpha
Helix 3	AA3	A	63	68	Right-handed alpha
Helix 4	AA4	A	134	137	Right-handed 310
Helix 5	AA5	A	243	247	Right-handed 310
Helix 6	AA6	A	346	350	Right-handed 310
Helix 7	AA7	B	20	25	Right-handed alpha
Helix 8	AA8	B	27	34	Right-handed alpha
Helix 9	AA9	B	63	68	Right-handed alpha
Helix 10	AB1	B	134	137	Right-handed 310
Helix 11	AB2	B	243	247	Right-handed 310
Helix 12	AB3	B	346	350	Right-handed 310

There are 18 sheets in PDB entry 5DZX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	87	96	parallel
Strand 3	A	74	82	anti-parallel
Strand 4	A	37	40	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	55	58	anti-parallel
Strand 3	A	47	50	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	115	first strand
Strand 2	A	197	205	parallel
Strand 3	A	179	188	anti-parallel
Strand 4	A	139	144	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	163	168	anti-parallel
Strand 3	A	150	155	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	238	239	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	224	first strand
Strand 2	A	299	309	parallel
Strand 3	A	285	294	anti-parallel
Strand 4	A	249	255	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	235	first strand
Strand 2	A	271	274	anti-parallel
Strand 3	A	263	265	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	323	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	371	376	anti-parallel
Strand 4	A	362	368	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	403	413	parallel
Strand 3	A	388	396	anti-parallel
Strand 4	A	352	355	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	8	first strand
Strand 2	B	87	96	parallel
Strand 3	B	74	82	anti-parallel
Strand 4	B	37	40	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	55	58	anti-parallel
Strand 3	B	47	50	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	115	first strand
Strand 2	B	197	205	parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	163	168	anti-parallel
Strand 3	B	150	155	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	238	239	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	224	first strand
Strand 2	B	299	309	parallel
Strand 3	B	285	294	anti-parallel
Strand 4	B	249	254	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	235	first strand
Strand 2	B	271	274	anti-parallel
Strand 3	B	263	265	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	323	first strand
Strand 2	B	334	342	anti-parallel
Strand 3	B	371	376	anti-parallel
Strand 4	B	362	368	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	388	396	anti-parallel
Strand 3	B	403	410	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DZX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZX