Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DZY entry

There are 4 chains in PDB entry 5DZY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	ASN 416
B	GLU 1	ILE 415
C	ALA 2	ASN 416
D	ALA 2	ASP 100

There are 36 helices in PDB entry 5DZY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	25	Right-handed alpha
Helix 2	AA2	A	29	34	Right-handed alpha
Helix 3	AA3	A	63	68	Right-handed alpha
Helix 4	AA4	A	134	137	Right-handed 310
Helix 5	AA5	A	243	247	Right-handed 310
Helix 6	AA6	A	346	350	Right-handed 310
Helix 7	AA7	B	19	25	Right-handed alpha
Helix 8	AA8	B	27	34	Right-handed alpha
Helix 9	AA9	B	63	68	Right-handed alpha
Helix 10	AB1	B	134	137	Right-handed 310
Helix 11	AB2	B	243	247	Right-handed 310
Helix 12	AB3	B	346	350	Right-handed 310
Helix 13	AB4	C	19	25	Right-handed alpha
Helix 14	AB5	C	27	34	Right-handed alpha
Helix 15	AB6	C	63	68	Right-handed alpha
Helix 16	AB7	C	134	137	Right-handed 310
Helix 17	AB8	C	158	160	Right-handed 310
Helix 18	AB9	C	243	247	Right-handed 310
Helix 19	AC1	C	346	350	Right-handed 310
Helix 20	AC2	D	19	25	Right-handed alpha
Helix 21	AC3	D	27	34	Right-handed alpha
Helix 22	AC4	D	134	137	Right-handed 310
Helix 23	AC5	D	243	247	Right-handed 310
Helix 24	AC6	D	346	350	Right-handed 310
Helix 25	AC7	E	20	25	Right-handed alpha
Helix 26	AC8	E	27	34	Right-handed alpha
Helix 27	AC9	E	63	67	Right-handed 310
Helix 28	AD1	E	134	137	Right-handed 310
Helix 29	AD2	E	243	247	Right-handed 310
Helix 30	AD3	E	346	350	Right-handed 310
Helix 31	AD4	F	20	25	Right-handed alpha
Helix 32	AD5	F	27	34	Right-handed alpha
Helix 33	AD6	F	63	68	Right-handed alpha
Helix 34	AD7	F	134	137	Right-handed 310
Helix 35	AD8	F	243	247	Right-handed 310
Helix 36	AD9	F	346	350	Right-handed 310

There are 55 sheets in PDB entry 5DZY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	87	96	parallel
Strand 3	A	75	82	anti-parallel
Strand 4	A	37	39	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	55	58	anti-parallel
Strand 3	A	47	50	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	115	first strand
Strand 2	A	195	205	parallel
Strand 3	A	179	188	anti-parallel
Strand 4	A	139	144	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	163	168	anti-parallel
Strand 3	A	150	155	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	238	239	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	224	first strand
Strand 2	A	299	309	parallel
Strand 3	A	285	293	anti-parallel
Strand 4	A	250	254	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	235	first strand
Strand 2	A	271	274	anti-parallel
Strand 3	A	263	265	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	322	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	371	376	anti-parallel
Strand 4	A	362	368	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	403	412	parallel
Strand 3	A	387	396	anti-parallel
Strand 4	A	352	355	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	8	first strand
Strand 2	B	87	96	parallel
Strand 3	B	75	82	anti-parallel
Strand 4	B	37	39	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	55	58	anti-parallel
Strand 3	B	47	50	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	115	first strand
Strand 2	B	197	205	parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	161	168	anti-parallel
Strand 3	B	150	157	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	238	239	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	224	first strand
Strand 2	B	299	309	parallel
Strand 3	B	285	293	anti-parallel
Strand 4	B	250	254	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	235	first strand
Strand 2	B	271	274	anti-parallel
Strand 3	B	263	265	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	322	first strand
Strand 2	B	335	342	anti-parallel
Strand 3	B	371	376	anti-parallel
Strand 4	B	362	368	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	403	412	parallel
Strand 3	B	387	396	anti-parallel
Strand 4	B	352	355	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	87	96	parallel
Strand 3	C	74	82	anti-parallel
Strand 4	C	37	39	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	55	58	anti-parallel
Strand 3	C	47	50	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	115	first strand
Strand 2	C	197	205	parallel
Strand 3	C	179	188	anti-parallel
Strand 4	C	139	144	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	162	168	anti-parallel
Strand 3	C	150	156	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	238	239	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	224	first strand
Strand 2	C	299	309	parallel
Strand 3	C	285	293	anti-parallel
Strand 4	C	250	255	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	235	first strand
Strand 2	C	271	274	anti-parallel
Strand 3	C	263	264	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	322	first strand
Strand 2	C	335	342	anti-parallel
Strand 3	C	371	376	anti-parallel
Strand 4	C	362	368	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	328	first strand
Strand 2	C	403	413	parallel
Strand 3	C	387	396	anti-parallel
Strand 4	C	352	355	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	8	first strand
Strand 2	D	91	96	parallel
Strand 3	D	75	82	anti-parallel
Strand 4	D	37	39	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	8	first strand
Strand 2	D	91	96	parallel
Strand 3	D	75	82	anti-parallel
Strand 4	D	87	88	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	55	58	anti-parallel
Strand 3	D	47	50	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	115	first strand
Strand 2	D	195	205	parallel
Strand 3	D	179	188	anti-parallel
Strand 4	D	139	144	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	125	first strand
Strand 2	D	161	168	anti-parallel
Strand 3	D	150	157	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	238	239	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	224	first strand
Strand 2	D	299	309	parallel
Strand 3	D	285	293	anti-parallel
Strand 4	D	250	254	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	235	first strand
Strand 2	D	271	274	anti-parallel
Strand 3	D	263	264	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	322	first strand
Strand 2	D	335	342	anti-parallel
Strand 3	D	371	376	anti-parallel
Strand 4	D	362	368	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	328	first strand
Strand 2	D	403	413	parallel
Strand 3	D	387	396	anti-parallel
Strand 4	D	352	355	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	87	96	parallel
Strand 3	E	74	82	anti-parallel
Strand 4	E	37	40	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	19	first strand
Strand 2	E	55	58	anti-parallel
Strand 3	E	47	50	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	115	first strand
Strand 2	E	195	205	parallel
Strand 3	E	179	188	anti-parallel
Strand 4	E	139	144	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	125	first strand
Strand 2	E	161	168	anti-parallel
Strand 3	E	150	157	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	214	first strand
Strand 2	E	238	239	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	224	first strand
Strand 2	E	299	309	parallel
Strand 3	E	285	293	anti-parallel
Strand 4	E	250	254	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	235	first strand
Strand 2	E	271	274	anti-parallel
Strand 3	E	263	265	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	317	322	first strand
Strand 2	E	335	342	anti-parallel
Strand 3	E	371	376	anti-parallel
Strand 4	E	362	368	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	326	328	first strand
Strand 2	E	403	413	parallel
Strand 3	E	387	396	anti-parallel
Strand 4	E	352	355	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	87	96	parallel
Strand 3	F	75	82	anti-parallel
Strand 4	F	37	40	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	19	first strand
Strand 2	F	55	58	anti-parallel
Strand 3	F	47	50	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	115	first strand
Strand 2	F	195	205	parallel
Strand 3	F	179	188	anti-parallel
Strand 4	F	139	144	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	125	first strand
Strand 2	F	161	168	anti-parallel
Strand 3	F	150	157	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	213	214	first strand
Strand 2	F	238	239	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	224	first strand
Strand 2	F	299	309	parallel
Strand 3	F	285	293	anti-parallel
Strand 4	F	250	254	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	235	first strand
Strand 2	F	271	274	anti-parallel
Strand 3	F	263	265	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	317	322	first strand
Strand 2	F	335	342	anti-parallel
Strand 3	F	371	376	anti-parallel
Strand 4	F	362	368	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	326	327	first strand
Strand 2	F	403	412	parallel
Strand 3	F	387	396	anti-parallel
Strand 4	F	352	355	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DZY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZY