Analysis of interatomic Contacts of Structural Units in PDB entry:
5E04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E04 entry

There are 2 chains in PDB entry 5E04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 116ASP 399
B
 SER 116LEU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5E04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 128Right-handed alpha
Helix 2
AA2
A
130 144Right-handed alpha
Helix 3
AA3
A
144 151Right-handed alpha
Helix 4
AA4
A
194 206Right-handed alpha
Helix 5
AA5
A
206 213Right-handed alpha
Helix 6
AA6
A
217 222Right-handed alpha
Helix 7
AA7
A
224 229Right-handed alpha
Helix 8
AA8
A
231 242Right-handed alpha
Helix 9
AA9
A
255 259Right-handed 310
Helix 10
AB1
A
260 273Right-handed alpha
Helix 11
AB2
A
274 276Right-handed 310
Helix 12
AB3
A
277 289Right-handed alpha
Helix 13
AB4
A
302 308Right-handed 310
Helix 14
AB5
A
315 319Right-handed 310
Helix 15
AB6
A
323 345Right-handed alpha
Helix 16
AB7
A
359 370Right-handed alpha
Helix 17
AB8
A
376 393Right-handed alpha
Helix 18
AB9
B
118 128Right-handed alpha
Helix 19
AC1
B
130 144Right-handed alpha
Helix 20
AC2
B
194 206Right-handed alpha
Helix 21
AC3
B
206 213Right-handed alpha
Helix 22
AC4
B
217 222Right-handed alpha
Helix 23
AC5
B
224 229Right-handed alpha
Helix 24
AC6
B
231 242Right-handed alpha
Helix 25
AC7
B
255 259Right-handed 310
Helix 26
AC8
B
260 274Right-handed alpha
Helix 27
AC9
B
277 290Right-handed alpha
Helix 28
AD1
B
303 308Right-handed 310
Helix 29
AD2
B
315 319Right-handed 310
Helix 30
AD3
B
323 343Right-handed alpha
Helix 31
AD4
B
352 357Right-handed alpha
Helix 32
AD5
B
359 370Right-handed alpha
Helix 33
AD6
B
376 393Right-handed alpha
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There are 4 sheets in PDB entry 5E04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
177 180anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
172 174anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
177 180anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 168first strand
Strand 2
B
171 174anti-parallel
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