Analysis of interatomic Contacts of Structural Units in PDB entry:
5E0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E0C entry

There is 1 chain in PDB entry 5E0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7ARG 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5E0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
77 94Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
110 113Right-handed 310
Helix 7
AA7
A
116 135Right-handed alpha
Helix 8
AA8
A
160 182Right-handed alpha
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
195 198Right-handed 310
Helix 11
AB2
A
200 215Right-handed alpha
Helix 12
AB3
A
228 233Right-handed alpha
Helix 13
AB4
A
242 260Right-handed alpha
Helix 14
AB5
A
261 264Right-handed 310
Helix 15
AB6
A
274 279Right-handed 310
Helix 16
AB7
A
280 284Right-handed 310
Helix 17
AB8
A
285 302Right-handed alpha
Helix 18
AB9
A
325 338Right-handed alpha
Helix 19
AC1
A
396 404Right-handed alpha
Helix 20
AC2
A
490 492Right-handed 310
Helix 21
AC3
A
498 503Right-handed alpha
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There are 7 sheets in PDB entry 5E0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
57 60parallel
Strand 3
A
97 101parallel
Strand 4
A
142 145parallel
Strand 5
A
190 193parallel
Strand 6
A
219 225parallel
Strand 7
A
267 272parallel
Strand 8
A
306 311parallel
Strand 9
A
20 23parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
322 323anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
359 364anti-parallel
Strand 3
A
392 395anti-parallel
Strand 4
A
386 389anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
425 432parallel
Strand 3
A
415 419anti-parallel
Strand 4
A
370 375anti-parallel
Strand 5
A
378 379anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
425 432parallel
Strand 3
A
410 411anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
448 452anti-parallel
Strand 3
A
494 497anti-parallel
Strand 4
A
486 489anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 443first strand
Strand 2
A
532 536anti-parallel
Strand 3
A
521 529anti-parallel
Strand 4
A
509 516anti-parallel
Strand 5
A
458 465anti-parallel
Strand 6
A
479 480anti-parallel
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