Analysis of interatomic Contacts of Structural Units in PDB entry:
5E0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E0E entry

There is 1 chain in PDB entry 5E0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 29ARG 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5E0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 59Right-handed alpha
Helix 2
AA2
A
80 89Right-handed alpha
Helix 3
AA3
A
91 96Right-handed alpha
Helix 4
AA4
A
104 109Right-handed alpha
Helix 5
AA5
A
117 131Right-handed alpha
Helix 6
AA6
A
141 159Right-handed alpha
Helix 7
AA7
A
167 185Right-handed alpha
Helix 8
AA8
A
192 200Right-handed alpha
Helix 9
AA9
A
202 210Right-handed alpha
Helix 10
AB1
A
211 225Right-handed alpha
Helix 11
AB2
A
229 256Right-handed alpha
Helix 12
AB3
A
263 275Right-handed alpha
Helix 13
AB4
A
276 278Right-handed 310
Helix 14
AB5
A
284 300Right-handed alpha
Helix 15
AB6
A
300 317Right-handed alpha
Helix 16
AB7
A
319 332Right-handed alpha
Helix 17
AB8
A
342 345Right-handed 310
Helix 18
AB9
A
346 361Right-handed alpha
Helix 19
AC1
A
392 397Right-handed alpha
Helix 20
AC2
A
409 413Right-handed 310
Helix 21
AC3
A
438 456Right-handed alpha
Helix 22
AC4
A
464 468Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 5E0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
73 79anti-parallel
Strand 3
A
387 391parallel
Strand 4
A
369 370anti-parallel
Strand 5
A
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
380 382anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
487 490anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il