Analysis of interatomic Contacts of Structural Units in PDB entry:
5E0N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E0N entry

There is 1 chain in PDB entry 5E0N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 THR 5GLU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5E0N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
24 28Right-handed 310
Helix 2
AA2
X
32 49Right-handed alpha
Helix 3
AA3
X
94 105Right-handed alpha
Helix 4
AA4
X
119 128Right-handed alpha
Helix 5
AA5
X
149 164Right-handed alpha
Helix 6
AA6
X
164 175Right-handed alpha
Helix 7
AA7
X
180 186Right-handed alpha
Helix 8
AA8
X
194 196Right-handed 310
Helix 9
AA9
X
197 211Right-handed alpha
Helix 10
AB1
X
213 230Right-handed alpha
Helix 11
AB2
X
232 238Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5E0N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
8 11first strand
Strand 2
X
17 22anti-parallel
Strand 3
X
54 59parallel
Strand 4
X
109 113parallel
Strand 5
X
130 134parallel
Strand 6
X
191 193parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
116 118first strand
Strand 2
X
138 140parallel
Strand 3
X
178 179anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il