Analysis of interatomic Contacts of Structural Units in PDB entry:
5E0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E0O entry

There is 1 chain in PDB entry 5E0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 63GLY 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5E0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 88Right-handed alpha
Helix 2
AA2
A
93 107Right-handed alpha
Helix 3
AA3
A
130 154Right-handed alpha
Helix 4
AA4
A
158 165Right-handed alpha
Helix 5
AA5
A
167 173Right-handed alpha
Helix 6
AA6
A
174 176Right-handed 310
Helix 7
AA7
A
179 199Right-handed alpha
Helix 8
AA8
A
199 205Right-handed alpha
Helix 9
AA9
A
224 228Right-handed 310
Helix 10
AB1
A
231 246Right-handed alpha
Helix 11
AB2
A
261 266Right-handed alpha
Helix 12
AB3
A
303 318Right-handed alpha
Helix 13
AB4
A
350 364Right-handed alpha
Helix 14
AB5
A
397 410Right-handed alpha
Helix 15
AB6
A
425 427Right-handed 310
Helix 16
AB7
A
428 439Right-handed alpha
Helix 17
AB8
A
451 462Right-handed alpha
Helix 18
AB9
A
473 489Right-handed alpha
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There are 3 sheets in PDB entry 5E0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
125 128anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
283 285anti-parallel
Strand 3
A
274 278anti-parallel
Strand 4
A
248 252parallel
Strand 5
A
209 213parallel
Strand 6
A
419 423parallel
Strand 7
A
443 448parallel
Strand 8
A
468 471parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
337 341anti-parallel
Strand 3
A
384 388anti-parallel
Strand 4
A
376 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il